GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001326-TA|BGIBMGA001326-PA|IPR013893|Ribonuclease P,
Rpp40
         (299 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.        27   0.49 
AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.      27   0.49 
AJ250916-1|CAB91840.1|  435|Anopheles gambiae serine protease pr...    25   2.6  
AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical prote...    24   6.0  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    24   6.0  
AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.       24   6.0  
AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.       24   6.0  
AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.       24   6.0  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   7.9  

>Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.
          Length = 115

 Score = 27.5 bits (58), Expect = 0.49
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 129 GHKRPHNYYEVSIKLKEIKNYDK 151
           G K+PH Y   ++ L+EI+ Y K
Sbjct: 33  GVKKPHRYRPGTVALREIRRYQK 55


>AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.
          Length = 136

 Score = 27.5 bits (58), Expect = 0.49
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 129 GHKRPHNYYEVSIKLKEIKNYDK 151
           G K+PH Y   ++ L+EI+ Y K
Sbjct: 35  GVKKPHRYRPGTVALREIRRYQK 57


>AJ250916-1|CAB91840.1|  435|Anopheles gambiae serine protease
           protein.
          Length = 435

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 8/25 (32%), Positives = 18/25 (72%), Gaps = 1/25 (4%)

Query: 61  DSVYYRINDCSLMEIIEPIFINTFV 85
           D + Y  ND +++++I+P F N+++
Sbjct: 285 DQISYE-NDIAMLKLIQPSFFNSYI 308


>AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical protein
           protein.
          Length = 297

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 116 HILEYDFQTLGFEGHKRPHNYYEVSIKLKEIKNYD 150
           H  E D + +G + HKR H   +      E  NYD
Sbjct: 120 HSSESDREGMGHDSHKRTHRLSDSDGGSTEGCNYD 154


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 17  TSNKSITLESVQKFIKMNDYYQSII 41
           TSNK ITL    KFI+M D+  + I
Sbjct: 284 TSNK-ITLSRDAKFIEMEDFEHAAI 307


>AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 17 TSNKSITLESVQKFIKMNDYYQSII 41
          TSNK ITL    KFI+M D+  + I
Sbjct: 54 TSNK-ITLSRDAKFIEMEDFEHAAI 77


>AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.
          Length = 215

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 17 TSNKSITLESVQKFIKMNDYYQSII 41
          TSNK ITL    KFI+M D+  + I
Sbjct: 54 TSNK-ITLSRDAKFIEMEDFEHAAI 77


>AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 17 TSNKSITLESVQKFIKMNDYYQSII 41
          TSNK ITL    KFI+M D+  + I
Sbjct: 54 TSNK-ITLSRDAKFIEMEDFEHAAI 77


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 260 IVEGYFSPTVLQKLCNIITDYVKSRDL 286
           I E      V  +LCNI+ DY   R+L
Sbjct: 587 IAEALRDKGVPLQLCNILQDYFTDREL 613


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 340,044
Number of Sequences: 2123
Number of extensions: 13954
Number of successful extensions: 31
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 10
length of query: 299
length of database: 516,269
effective HSP length: 64
effective length of query: 235
effective length of database: 380,397
effective search space: 89393295
effective search space used: 89393295
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)