Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001326-TA|BGIBMGA001326-PA|IPR013893|Ribonuclease P,
Rpp40
(299 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical ... 32 0.57
U51998-6|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 30 1.7
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 30 1.7
U41274-5|AAA82461.2| 571|Caenorhabditis elegans Nematode astaci... 30 2.3
AJ561208-1|CAD99210.1| 278|Caenorhabditis elegans NAS-15 protei... 30 2.3
Z49968-10|CAB54270.3| 490|Caenorhabditis elegans Hypothetical p... 29 4.0
Z49968-9|CAB54271.3| 492|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z49968-6|CAB54272.2| 474|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z81109-6|CAB03252.1| 229|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z47811-3|CAA87787.2| 723|Caenorhabditis elegans Hypothetical pr... 28 7.0
U40410-4|AAA81393.1| 259|Caenorhabditis elegans Hypothetical pr... 28 7.0
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 28 7.0
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 28 7.0
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 28 7.0
AF489839-1|AAN09795.1| 723|Caenorhabditis elegans lim and trans... 28 7.0
Z93388-10|CAB07653.1| 136|Caenorhabditis elegans Hypothetical p... 28 9.3
Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical p... 28 9.3
Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical pr... 28 9.3
X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein... 28 9.3
U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein... 28 9.3
U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein... 28 9.3
U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein... 28 9.3
U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protei... 28 9.3
AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3 pr... 28 9.3
AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone prote... 28 9.3
AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone prote... 28 9.3
>AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical
protein Y71D11A.1 protein.
Length = 506
Score = 31.9 bits (69), Expect = 0.57
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 137 YEVSIKLKEIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAKYFYELNYKVTAKPP 196
YE+ + L+ I + D ++ +K F +++ + N + +T+A + T PP
Sbjct: 228 YELPMSLRLIVS-DNAKENSRKSTTF-INLVEKSPNLALPKTTVAPTTTTVPRTTTTVPP 285
Query: 197 VLKTVSPTITEIPSVSHASIDELVE 221
TV PT T +P ++ +++++
Sbjct: 286 TTTTVPPTTTTVPPITTTYSEDIID 310
>U51998-6|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 30.3 bits (65), Expect = 1.7
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 99 CVIQNCFAVTPEGILI----LHILEY--DFQTLGFEGHKRPHNYYEVSIKLKEIKNYDKI 152
C + +C ++T +G+ I +++ D F Y+++S LK+ +Y
Sbjct: 379 CTVLSCSSITIDGVKIQITDTKVVQKVDDISYYIFVNTIANPGYHQIS--LKQQGSYAFF 436
Query: 153 RQGLKKLGKFDFDV-IWEPTNEDICPSTIAKYFYELNYKVTAKPPVLKTVSPTITEIPSV 211
G KL + ++ +PT P+T FY + T PP TV T T +P+
Sbjct: 437 VYGKNKLYSYGYEGGANKPTVVLAPPTTPGPTFYPVTTVSTMSPPTTVTVPTTPTPVPTT 496
Query: 212 SH 213
++
Sbjct: 497 TN 498
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 30.3 bits (65), Expect = 1.7
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 99 CVIQNCFAVTPEGILI----LHILEY--DFQTLGFEGHKRPHNYYEVSIKLKEIKNYDKI 152
C + +C ++T +G+ I +++ D F Y+++S LK+ +Y
Sbjct: 379 CTVLSCSSITIDGVKIQITDTKVVQKVDDISYYIFVNTIANPGYHQIS--LKQQGSYAFF 436
Query: 153 RQGLKKLGKFDFDV-IWEPTNEDICPSTIAKYFYELNYKVTAKPPVLKTVSPTITEIPSV 211
G KL + ++ +PT P+T FY + T PP TV T T +P+
Sbjct: 437 VYGKNKLYSYGYEGGANKPTVVLAPPTTPGPTFYPVTTVSTMSPPTTVTVPTTPTPVPTT 496
Query: 212 SH 213
++
Sbjct: 497 TN 498
>U41274-5|AAA82461.2| 571|Caenorhabditis elegans Nematode astacin
protease protein15 protein.
Length = 571
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 153 RQGLKKLGKFDFDVIWEPTNEDICPSTIAKYFYELNYKV------TAKPPVLKTVSPTIT 206
R G K+ KF + ++ E P+T A + V T KPPV++TVSP +
Sbjct: 289 RNGFSKVDKFKINTLYGCPVEGEKPTTSAPTSGPIVITVKPVVITTGKPPVIQTVSPAVP 348
Query: 207 EIPS 210
PS
Sbjct: 349 LKPS 352
>AJ561208-1|CAD99210.1| 278|Caenorhabditis elegans NAS-15 protein
protein.
Length = 278
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 153 RQGLKKLGKFDFDVIWEPTNEDICPSTIAKYFYELNYKV------TAKPPVLKTVSPTIT 206
R G K+ KF + ++ E P+T A + V T KPPV++TVSP +
Sbjct: 183 RNGFSKVDKFKINTLYGCPVEGEKPTTSAPTSGPIVITVKPVVITTGKPPVIQTVSPAVP 242
Query: 207 EIPS 210
PS
Sbjct: 243 LKPS 246
>Z49968-10|CAB54270.3| 490|Caenorhabditis elegans Hypothetical
protein M110.5a protein.
Length = 490
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 189 YKVTAKPPVLKTVSPTITEIPSVSHASI--DELVEWTG 224
+ A+PP L TV+PT P H+S + ++WTG
Sbjct: 336 FNTQARPPPLPTVAPTQYRDPFSVHSSAIPNSNIDWTG 373
>Z49968-9|CAB54271.3| 492|Caenorhabditis elegans Hypothetical
protein M110.5b protein.
Length = 492
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 189 YKVTAKPPVLKTVSPTITEIPSVSHASI--DELVEWTG 224
+ A+PP L TV+PT P H+S + ++WTG
Sbjct: 336 FNTQARPPPLPTVAPTQYRDPFSVHSSAIPNSNIDWTG 373
>Z49968-6|CAB54272.2| 474|Caenorhabditis elegans Hypothetical
protein M110.5c protein.
Length = 474
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 189 YKVTAKPPVLKTVSPTITEIPSVSHASI--DELVEWTG 224
+ A+PP L TV+PT P H+S + ++WTG
Sbjct: 320 FNTQARPPPLPTVAPTQYRDPFSVHSSAIPNSNIDWTG 357
>Z81109-6|CAB03252.1| 229|Caenorhabditis elegans Hypothetical
protein R10D12.9 protein.
Length = 229
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 221 EWTGILAHNGNLSQYETYISTYCPPESER-SLHSTNISVIIV 261
EWT I+ + NL+ YIS Y +S R +L IS +I+
Sbjct: 4 EWTHIIINTVNLTALSFYISAYAYYQSNRKNLIGQLISAVII 45
>Z47811-3|CAA87787.2| 723|Caenorhabditis elegans Hypothetical
protein K02C4.4 protein.
Length = 723
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 53 FIKDTITEDSVYYRINDCSLMEIIEPIFINTFVKNGYL 90
F+ ++TED V +R++ S ++ IF N+ YL
Sbjct: 540 FVMQSVTEDVVTFRVHAPSTRPLLLDIFANSVSSGAYL 577
>U40410-4|AAA81393.1| 259|Caenorhabditis elegans Hypothetical
protein C54G7.1 protein.
Length = 259
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 152 IRQGLKKLGK--FDFDVIWEPTNEDICPSTIAKYFYELNYKVTAKPPVLKTVSPTITEIP 209
I++ L+ L K +++D + N D C S+ A++ +LN++ + L + TI ++P
Sbjct: 154 IQESLESLCKSVYEYDKCFVNENYDFCGSSAARFLVKLNHQTSHTILELLDQTNTIGKLP 213
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 108 TPEGILILHILEYDFQTLGFEGHKRPHNYYEVSIKLKE 145
+P+ IL L +D Q L FE H+ Y ++S + K+
Sbjct: 255 SPDPILSAFKLSWDLQRLAFEEHEFKETYLQLSEQCKQ 292
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 108 TPEGILILHILEYDFQTLGFEGHKRPHNYYEVSIKLKE 145
+P+ IL L +D Q L FE H+ Y ++S + K+
Sbjct: 235 SPDPILSAFKLSWDLQRLAFEEHEFKETYLQLSEQCKQ 272
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 108 TPEGILILHILEYDFQTLGFEGHKRPHNYYEVSIKLKE 145
+P+ IL L +D Q L FE H+ Y ++S + K+
Sbjct: 235 SPDPILSAFKLSWDLQRLAFEEHEFKETYLQLSEQCKQ 272
>AF489839-1|AAN09795.1| 723|Caenorhabditis elegans lim and
transglutaminase domainprotein protein.
Length = 723
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 53 FIKDTITEDSVYYRINDCSLMEIIEPIFINTFVKNGYL 90
F+ ++TED V +R++ S ++ IF N+ YL
Sbjct: 540 FVMQSVTEDVVTFRVHAPSTRPLLLDIFANSVSSGAYL 577
>Z93388-10|CAB07653.1| 136|Caenorhabditis elegans Hypothetical
protein T10C6.13 protein.
Length = 136
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDKIRQGLKKLGKF 162
G K+PH Y ++ L+EI+ Y K + L + F
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.7 protein.
Length = 136
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDKIRQGLKKLGKF 162
G K+PH Y ++ L+EI+ Y K + L + F
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.3 protein.
Length = 136
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDKIRQGLKKLGKF 162
G K+PH Y ++ L+EI+ Y K + L + F
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.2 protein.
Length = 136
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDKIRQGLKKLGKF 162
G K+PH Y ++ L+EI+ Y K + L + F
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical
protein F54E12.1 protein.
Length = 136
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDKIRQGLKKLGKF 162
G K+PH Y ++ L+EI+ Y K + L + F
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical
protein F08G2.3 protein.
Length = 136
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDKIRQGLKKLGKF 162
G K+PH Y ++ L+EI+ Y K + L + F
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical
protein B0035.10 protein.
Length = 136
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDKIRQGLKKLGKF 162
G K+PH Y ++ L+EI+ Y K + L + F
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical
protein B0024.6 protein.
Length = 1161
Score = 27.9 bits (59), Expect = 9.3
Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Query: 109 PEGILILHILEYDFQTLGFEGHKRPHNYYEVSIKLKEIKNYDKI-RQGLKKLGKFDFDVI 167
P + L L D EG NY S I DKI R+GL F F ++
Sbjct: 78 PGNVFHLGFLHCDVLENNVEGSTTYINY-RTSASAASIA-IDKIKREGLLLGYDFKFTIL 135
Query: 168 WEPTNEDICPSTIAKYFYELNYKVTAKPPVLKTVSP 203
++ +E+I K F E N V P P
Sbjct: 136 YDQCDENIAAGNAIKLFAEHNVDVLFGPTTNNAAMP 171
>Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical
protein F22B3.2 protein.
Length = 136
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDKIRQGLKKLGKF 162
G K+PH Y ++ L+EI+ Y K + L + F
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein
protein.
Length = 136
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDKIRQGLKKLGKF 162
G K+PH Y ++ L+EI+ Y K + L + F
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein 6
protein.
Length = 136
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDKIRQGLKKLGKF 162
G K+PH Y ++ L+EI+ Y K + L + F
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein 17
protein.
Length = 136
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDKIRQGLKKLGKF 162
G K+PH Y ++ L+EI+ Y K + L + F
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein 27
protein.
Length = 136
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDKIRQGLKKLGKF 162
G K+PH Y ++ L+EI+ Y K + L + F
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protein
59 protein.
Length = 136
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDKIRQGLKKLGKF 162
G K+PH Y ++ L+EI+ Y K + L + F
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3
protein.
Length = 136
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDKIRQGLKKLGKF 162
G K+PH Y ++ L+EI+ Y K + L + F
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone protein
32 protein.
Length = 136
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDKIRQGLKKLGKF 162
G K+PH Y ++ L+EI+ Y K + L + F
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone protein
49 protein.
Length = 136
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDKIRQGLKKLGKF 162
G K+PH Y ++ L+EI+ Y K + L + F
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.137 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,343,510
Number of Sequences: 27539
Number of extensions: 367949
Number of successful extensions: 984
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 32
length of query: 299
length of database: 12,573,161
effective HSP length: 81
effective length of query: 218
effective length of database: 10,342,502
effective search space: 2254665436
effective search space used: 2254665436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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