GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001326-TA|BGIBMGA001326-PA|IPR013893|Ribonuclease P,
Rpp40
         (299 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   1.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   1.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   4.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.7  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 136 YYEVSIKLKEIKNYDKIRQGLKKLGKFDF 164
           YY++S   K+ + Y+ I   L  +GKF F
Sbjct: 35  YYKISGNGKQYEAYEGIPYALPPVGKFRF 63


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 136 YYEVSIKLKEIKNYDKIRQGLKKLGKFDF 164
           YY++S   K+ + Y+ I   L  +GKF F
Sbjct: 35  YYKISGNGKQYEAYEGIPYALPPVGKFRF 63


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 18/58 (31%), Positives = 22/58 (37%)

Query: 134 HNYYEVSIKLKEIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAKYFYELNYKV 191
           H Y  V    K   N D IR+ L  L  F    I EP N  +     AK     +Y +
Sbjct: 428 HCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLNVQRAAKCIIGKDYSL 485


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 222 WTGILAHNGNLSQYETYISTYCPPESERSLHSTNI 256
           WT +L   G+     T   T C  E+   LHS NI
Sbjct: 454 WT-VLRDKGHFDDGTTRFYTACVVEAFDYLHSRNI 487


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 105 FAVTPEGILILHILEYDFQTLGF 127
           F + P G L++H LE+  Q  G+
Sbjct: 185 FHLLPTGELLVHSLEFSDQIHGY 207


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 105 FAVTPEGILILHILEYDFQTLGF 127
           F + P G L++H LE+  Q  G+
Sbjct: 185 FHLLPTGELLVHSLEFSDQIHGY 207


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,887
Number of Sequences: 429
Number of extensions: 4690
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 299
length of database: 140,377
effective HSP length: 57
effective length of query: 242
effective length of database: 115,924
effective search space: 28053608
effective search space used: 28053608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)