Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001325-TA|BGIBMGA001325-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (226 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    65   4e-13

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 65.3 bits (152), Expect = 4e-13
 Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 14/213 (6%)

Query: 21  CFXXXXXXXXXXXXXGIPDLGIKPLDPLHI-SV-INGNQGGLELT--FKDTIVRGLS-GC 75
           C              G+    I P++PL + SV I  +QG + L   +K+  + GL+   
Sbjct: 43  CIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNL 102

Query: 76  HVEGVKNDPAKK-KQAVTIKCSVTLTGDYKLSGKLLVLPIEGEGKYNIKIRDIVIKTAND 134
            ++    D  K    + +    V    DYK+ GK+L+LP+ G GK NI + D  +K+ ND
Sbjct: 103 EIKNYNIDWDKCILSSESYNPQVDFVADYKIEGKVLLLPVRGAGKSNITMYD--LKSHND 160

Query: 135 LVTVT-GADGKPHWHIESWKHTYEVKTG-AHFQFENLFNGNKVLATPVEEFVNSNWKDVM 192
           +       +G+ +  I+  KH  +        +FENLF+GNK L   +  F+N N + + 
Sbjct: 161 IYCEKYEKNGETYLRIK--KHAVKFNPAKVKLRFENLFDGNKELGEQMNRFINENSELLF 218

Query: 193 QEVAPPIVRSIVSEVVAAVD-ALYKAVPAEELY 224
           +E+      +  S V   +D  ++  VP ++++
Sbjct: 219 KELQAAYEETF-SLVFTKIDNEIFNRVPFDKIF 250


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,309
Number of Sequences: 429
Number of extensions: 2395
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 226
length of database: 140,377
effective HSP length: 56
effective length of query: 170
effective length of database: 116,353
effective search space: 19780010
effective search space used: 19780010
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)