Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001325-TA|BGIBMGA001325-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (226 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01360.1 68417.m00176 expressed protein                             29   2.6  
At1g19900.1 68414.m02495 glyoxal oxidase-related contains simila...    28   5.9  
At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)...    27   7.8  

>At4g01360.1 68417.m00176 expressed protein 
          Length = 348

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 94  KCSVTLTGDYKLSGKLLVLPIEGEGKYNIKIRDIVIKTANDLVTVT 139
           K   T   + +LS KLL L    E    + IR++V K  ND+V+V+
Sbjct: 13  KILFTKKNNARLSPKLLSLLNNFETNLTVSIRELVPKDKNDIVSVS 58


>At1g19900.1 68414.m02495 glyoxal oxidase-related contains
           similarity to glyoxal oxidase precursor [Phanerochaete
           chrysosporium] gi|1050302|gb|AAA87594
          Length = 548

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 117 EGKYNIKIRDIVIKTANDLVTVTGADGKPHWHIESWKH 154
           +G YN+  +   +K  +    +   D KP W +E   H
Sbjct: 290 KGSYNLARKKTFVKALDTCARIKINDAKPEWAVEKMPH 327


>At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)
           nearly identical to SH3 domain-containing protein 3
           [Arabidopsis thaliana] GI:16974680; contains Pfam
           profile PF00018: SH3 domain
          Length = 351

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/66 (24%), Positives = 34/66 (51%)

Query: 72  LSGCHVEGVKNDPAKKKQAVTIKCSVTLTGDYKLSGKLLVLPIEGEGKYNIKIRDIVIKT 131
           L+   ++ +K + A   +  T   +   +  ++L+ + LV  +EGE  Y+++I  I+   
Sbjct: 195 LAEAKMQELKANMAVLGKEATAALAAVESQQHRLTFQRLVAMVEGEKNYHLRIAAILSDI 254

Query: 132 ANDLVT 137
             D+VT
Sbjct: 255 EADMVT 260


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,284,845
Number of Sequences: 28952
Number of extensions: 217726
Number of successful extensions: 475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 3
length of query: 226
length of database: 12,070,560
effective HSP length: 79
effective length of query: 147
effective length of database: 9,783,352
effective search space: 1438152744
effective search space used: 1438152744
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)