GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001325-TA|BGIBMGA001325-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (226 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           27   0.16 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   5.9  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   5.9  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   5.9  

>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 142 DGKPHWHIESWKHTYEVKTGAHFQFENLFNGNKVLATPVEE--FVNSNWKDVMQEVAPPI 199
           D    W+ ++  ++Y+      + F+N  +G    A P +E  F    W     +V+ P 
Sbjct: 183 DSANQWYSQTIDNSYQFCDNLQYSFDNQCSGTIDWALPKQEDCFYQEGWNGQSFDVSQPA 242

Query: 200 VRSI 203
           + ++
Sbjct: 243 LTTL 246


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 141 ADGKPHWHIESWKHTYEVKTGAH 163
           ADG  H  +   K+  EV +G H
Sbjct: 123 ADGHQHHFLHENKYQLEVDSGYH 145


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 141 ADGKPHWHIESWKHTYEVKTGAH 163
           ADG  H  +   K+  EV +G H
Sbjct: 123 ADGHQHHFLHENKYQLEVDSGYH 145


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 141 ADGKPHWHIESWKHTYEVKTGAH 163
           ADG  H  +   K+  EV +G H
Sbjct: 123 ADGHQHHFLHENKYQLEVDSGYH 145


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,999
Number of Sequences: 317
Number of extensions: 2024
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 226
length of database: 114,650
effective HSP length: 55
effective length of query: 171
effective length of database: 97,215
effective search space: 16623765
effective search space used: 16623765
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)