Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001325-TA|BGIBMGA001325-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
(226 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18) 34 0.083
SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08) 30 1.8
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_39378| Best HMM Match : VWA (HMM E-Value=0) 28 5.5
SB_1695| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 28 7.2
SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_56770| Best HMM Match : Cadherin (HMM E-Value=0) 27 9.6
SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89) 27 9.6
>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
Length = 1719
Score = 34.3 bits (75), Expect = 0.083
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 126 DIVIKTANDLVTVTGADGKPHWHIESWKHTYEVKTGAHFQFENLF----NGNKVLATPVE 181
D +++TA+DL V+ +D PHW + + G ++ LF K V
Sbjct: 1260 DSLLETADDLEMVSESDQYPHWRRQLYSFQMGKHKGKSYELLKLFKDFKESGKASIPSVN 1319
Query: 182 EFVNSNWKDVMQEVAPPIVRSIVSEVVAAVDALYK 216
+ W D+ E P+ R E++ +D K
Sbjct: 1320 REIVRVWVDLCSEKGVPLERE-AEEMIRLLDESLK 1353
>SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)
Length = 1188
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 171 NGNKVLATPVEEFVNSNWKDVMQEVAPPIVRSIVSEVVAAV 211
N VL + VE + SN + V+ + P++ SIV V+A++
Sbjct: 574 NVEPVLVSSVEPVLASNVEPVLASIVEPVLASIVEPVLASI 614
>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1907
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 117 EGKYNIKIRDIVIKTAND-LVTVTGADGKPHWHIESWKHTYEVKTGAHFQFENLFNGNK 174
+G ++ RD+ + D L+ +T + K W + W + TG H + E NG++
Sbjct: 1341 QGTIGLEFRDVKHELLEDHLLNITSSTHKGLWWSQFWSELFNCSTG-HVKSEKTCNGSE 1398
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 148 HIESWKHTYEVKTGAHFQFENLFNGNKVLATPVEEFVN 185
H E ++ ++ +G + Q ENL N NK+L +EE N
Sbjct: 676 HEEEFRQDRDLISGLNMQLENLKNKNKMLHEQLEEVSN 713
>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
Length = 2865
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 37 IPDLGIKPLDPLHISVI---NGNQGGLELT-FKDTIVRGLSGCHVEGVKNDPAKKKQA-- 90
IP+L + DP V N N G+ F+D+++ L+ C++ KN A
Sbjct: 1006 IPELNLIASDPDDKFVFLLRNYNDSGVAANAFQDSVIEALNSCYINPCKNGGTCSTSASK 1065
Query: 91 VTIKCSVTLTG 101
+ C T TG
Sbjct: 1066 LICACKPTFTG 1076
>SB_1695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 28.3 bits (60), Expect = 5.5
Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 8/131 (6%)
Query: 71 GLSGCHVEGVKNDPAKKKQAVTIKCSVTLTGDYKLSGKLLVLPIEGEGKYNI----KIRD 126
G +GC G D + ++ V ++ + + K S + + + + Y++ IR
Sbjct: 68 GDAGC--SGSDTDGEEAEKVVVVESDTSDEEENKESMESYIELDQPQATYDVIDTYNIRH 125
Query: 127 IVIKTANDLVTVTGADGKP--HWHIESWKHTYEVKTGAHFQFENLFNGNKVLATPVEEFV 184
+V L+ A+ P H E WK Y+ + + E ++ K L+ + V
Sbjct: 126 VVSHNVEALILDLMAEWDPLAHRDHEVWKVFYKARATLNGSIELIWEEMKNLSDRIGLAV 185
Query: 185 NSNWKDVMQEV 195
+WK +Q++
Sbjct: 186 QGHWKSYIQDL 196
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/67 (19%), Positives = 32/67 (47%)
Query: 101 GDYKLSGKLLVLPIEGEGKYNIKIRDIVIKTANDLVTVTGADGKPHWHIESWKHTYEVKT 160
G + + +L + + + K+ ++ ++ I + + +V GKP + +K E++
Sbjct: 2379 GQVQSAARLHITELAIQPKFAERLTNVSISSGDTIVLECRVTGKPRPQVAWFKDDKEIRQ 2438
Query: 161 GAHFQFE 167
+ F FE
Sbjct: 2439 DSRFSFE 2445
>SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 121 NIKIRDIVIKTANDLVTVTGADGKPHWHIESWKHTYEVKTGAH 163
+++I+ T N LVT G ++++ W +E +TGA+
Sbjct: 343 DVRIKQCTTITHNYLVTTHHELGHIQYYLQYWDQPFEYRTGAN 385
>SB_56770| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1136
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 51 SVINGNQGGLELTFKDTIVRGLSGCHVE 78
SV NG +E + +DT+V+GL CH E
Sbjct: 124 SVYNGTV--MEGSKEDTVVKGLENCHAE 149
>SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89)
Length = 724
Score = 27.5 bits (58), Expect = 9.6
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 8/125 (6%)
Query: 84 PAKKKQAVTIKCSVTLTGDYKLSGKLLVLPIEGEGK-YNIKIRDIVIKTAND-LVTVTGA 141
P K + L YKL+ K + K Y+++ RD+ ++ + LV
Sbjct: 252 PTKSLSSYVESLRARLDYAYKLASKEKDAAADRNKKRYDVRARDVALQPGDRVLVRNLSI 311
Query: 142 DGKPHWHIESWKHTYEVKTGAHFQFE----NLFNGNKVLATPVEEFVNSNWKDVMQEVAP 197
GK H + W+ T + H G + VEE + D M++ AP
Sbjct: 312 RGK-HKLSDRWEETVHIVEARHADLPVYTVRPEQGELLFQAEVEE-QDPQVADEMEDTAP 369
Query: 198 PIVRS 202
P+V +
Sbjct: 370 PVVEN 374
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.137 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,307,224
Number of Sequences: 59808
Number of extensions: 296669
Number of successful extensions: 641
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 17
length of query: 226
length of database: 16,821,457
effective HSP length: 80
effective length of query: 146
effective length of database: 12,036,817
effective search space: 1757375282
effective search space used: 1757375282
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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