GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001325-TA|BGIBMGA001325-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (226 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67884-4|CAH60753.1|  905|Caenorhabditis elegans Hypothetical pr...    35   0.055
Z67884-3|CAA91809.2|  921|Caenorhabditis elegans Hypothetical pr...    35   0.055
AL008868-1|CAA15515.2|  213|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z83731-5|CAB06021.2|  471|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AF025453-10|AAK31402.3|  487|Caenorhabditis elegans Hypothetical...    27   8.3  

>Z67884-4|CAH60753.1|  905|Caenorhabditis elegans Hypothetical
           protein T14G8.3b protein.
          Length = 905

 Score = 34.7 bits (76), Expect = 0.055
 Identities = 21/75 (28%), Positives = 32/75 (42%)

Query: 129 IKTANDLVTVTGADGKPHWHIESWKHTYEVKTGAHFQFENLFNGNKVLATPVEEFVNSNW 188
           +KT+ D+ T   A GK H   E  K         + Q E+LF      A    E +    
Sbjct: 269 VKTSKDISTNARAIGKLHKEAERVKQVLSANKDTYAQVESLFEEQNFRAKVTREELEKMI 328

Query: 189 KDVMQEVAPPIVRSI 203
           +D+   +A PI+ +I
Sbjct: 329 EDLEPRIAAPILDAI 343


>Z67884-3|CAA91809.2|  921|Caenorhabditis elegans Hypothetical
           protein T14G8.3a protein.
          Length = 921

 Score = 34.7 bits (76), Expect = 0.055
 Identities = 21/75 (28%), Positives = 32/75 (42%)

Query: 129 IKTANDLVTVTGADGKPHWHIESWKHTYEVKTGAHFQFENLFNGNKVLATPVEEFVNSNW 188
           +KT+ D+ T   A GK H   E  K         + Q E+LF      A    E +    
Sbjct: 285 VKTSKDISTNARAIGKLHKEAERVKQVLSANKDTYAQVESLFEEQNFRAKVTREELEKMI 344

Query: 189 KDVMQEVAPPIVRSI 203
           +D+   +A PI+ +I
Sbjct: 345 EDLEPRIAAPILDAI 359


>AL008868-1|CAA15515.2|  213|Caenorhabditis elegans Hypothetical
           protein C53C7.3 protein.
          Length = 213

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 190 DVMQEVAPPIVRSIVSEVVAAV 211
           DV QE APP+ R I++E++  V
Sbjct: 63  DVQQEPAPPLERPILNEIIRPV 84


>Z83731-5|CAB06021.2|  471|Caenorhabditis elegans Hypothetical
           protein M04C9.5 protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 6/44 (13%)

Query: 150 ESWKHTYEVKTGAHFQFENLFNGNKVLATPVEEFVNSNWKDVMQ 193
           + W   Y++ +  +F+F+      +V+ATP+E+ VN+  K+ M+
Sbjct: 229 DEWPEGYQLASAMNFRFQ------QVVATPMEQVVNTISKEGMK 266


>AF025453-10|AAK31402.3|  487|Caenorhabditis elegans Hypothetical
           protein C08F1.1 protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 166 FENLFNGNKVLATPVEEFVNSNWK 189
           FE+L  G ++L+ PVE+  N+ WK
Sbjct: 45  FESLKEG-RILSAPVEQLFNATWK 67


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,396,485
Number of Sequences: 27539
Number of extensions: 222454
Number of successful extensions: 450
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 5
length of query: 226
length of database: 12,573,161
effective HSP length: 79
effective length of query: 147
effective length of database: 10,397,580
effective search space: 1528444260
effective search space used: 1528444260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)