GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001324-TA|BGIBMGA001324-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (236 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   1.8  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    27   1.8  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    26   4.2  
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch...    26   5.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   7.3  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    25   9.6  

>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 152 EGDRYWHVSDWKHSAEDVSKVEYQFQNLFNGN 183
           EGD +W + DW    +D +  E   +  FNGN
Sbjct: 77  EGD-HWLMPDWSSMPDDETITEDSEEETFNGN 107


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 163 KHSAEDVSKVE-YQFQNLFNGNR-DLAKTIHD-FANSN-WREIFQEVAPPM 209
           K   E+ +K E    + L N N  D+  T+     N N W++IF E APP+
Sbjct: 407 KEEKEETNKTEDVSIEVLDNNNESDIGLTVKKKVENGNAWKQIFSERAPPL 457


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 163 KHSAEDVSKVEYQFQNLFNGNRDLAKTIHDF 193
           K   E + K    FQ LF   RD+ KTI++F
Sbjct: 19  KAEIEILKKQNELFQPLFEQRRDILKTINNF 49


>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 146 VEERIVEGDRYWHVSDWKHSAEDVSKVEYQFQNLFNGNRDLAKTIHDFANSN 197
           VEE +   D YW   DW+   E +     +F+  +        +I D  N N
Sbjct: 28  VEEHLRLNDCYWDTHDWRKCTEQME----EFRKCWEKRHGPLPSISDKKNKN 75


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 189  TIHDFANSNWREIFQEVAPPMVKAIVSKIIHETFKLF 225
            T+   + S W  IF  +   M  ++V   I ++F+LF
Sbjct: 1131 TVFSLSGSYWNSIFDYIKYAMKMSVVDAPIVKSFELF 1167


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 117 GGQLLILPIEGTGKYXXXXXXXXXXXXLDVEERIVEGDRYWHVSDWKHS-AEDVSKVEYQ 175
           GG   +  ++    Y            LD+      GD  +  + W +   E  + +E +
Sbjct: 315 GGWNYLFQLDWKMPYEEFRSSKNRREYLDIPLAWSPGDMIYEKAVWSYVFPEGATNIEIE 374

Query: 176 FQNLFNGNRDLAKTIHDFANSNWREIFQEVAPPMVKAIVSKIIHETFK 223
                + N ++ K IH F ++  R++F   A  +   + S I+H +++
Sbjct: 375 MPVEIS-NSNVTK-IHKFLDTLGRQVFTYEALNVTDGVPSDIVHISYE 420


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 907,447
Number of Sequences: 5004
Number of extensions: 31419
Number of successful extensions: 54
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 6
length of query: 236
length of database: 2,362,478
effective HSP length: 71
effective length of query: 165
effective length of database: 2,007,194
effective search space: 331187010
effective search space used: 331187010
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)