GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001324-TA|BGIBMGA001324-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (236 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30159| Best HMM Match : zf-C3HC (HMM E-Value=3)                     31   1.1  
SB_57133| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_44636| Best HMM Match : IncA (HMM E-Value=0.32)                     29   2.5  
SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)             29   2.5  
SB_3949| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_2520| Best HMM Match : Fer2 (HMM E-Value=5.2)                       29   2.5  
SB_27385| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_10908| Best HMM Match : Cytochrom_B562 (HMM E-Value=3.4)            29   3.3  
SB_49789| Best HMM Match : IncA (HMM E-Value=0.47)                     29   4.4  
SB_33256| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_17725| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_23275| Best HMM Match : IncA (HMM E-Value=0.43)                     29   4.4  
SB_11599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_818| Best HMM Match : Gelsolin (HMM E-Value=6.4)                    29   4.4  
SB_56144| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_55205| Best HMM Match : DUF1270 (HMM E-Value=3.7)                   28   5.8  
SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_16978| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_7786| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_30159| Best HMM Match : zf-C3HC (HMM E-Value=3)
          Length = 440

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 155 RYWHVSDWKHSAEDVSKVEYQFQ----NLFNGNRDLAKTIHDFANSNWR 199
           RY + S ++ SA++   V++ F     + F+ N DL KT++ F   +W+
Sbjct: 9   RYPYYSRFRFSADEHGDVQFVFNGDEYDPFDKNGDLVKTLYHFPGDSWK 57


>SB_57133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 155 RYWHVSDWKHSAEDVSKVEYQFQ----NLFNGNRDLAKTIHDFANSNWR 199
           RY + S ++ SA++   V++ F     + F+ N +L KT++ F  ++W+
Sbjct: 9   RYPYYSRFRFSADEHGNVQFVFNGDEYDPFDKNGNLVKTLYHFPGNSWK 57


>SB_44636| Best HMM Match : IncA (HMM E-Value=0.32)
          Length = 554

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 155 RYWHVSDWKHSAEDVSKVEYQFQ----NLFNGNRDLAKTIHDFANSNWR 199
           RY + S ++ SA++   V++ F     + F+ N +L KT++ F  ++W+
Sbjct: 179 RYPYYSRFRFSADEHGNVQFVFNGDEYDPFDKNGNLVKTLYHFPGNSWK 227


>SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)
          Length = 1480

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 155 RYWHVSDWKHSAEDVSKVEYQFQ----NLFNGNRDLAKTIHDFANSNWR 199
           RY + S ++ SA++   V++ F     + F+ N +L KT++ F  ++W+
Sbjct: 9   RYPYYSRFRFSADEHGDVQFNFNGDEYDPFDKNGNLVKTLYRFPGNSWK 57


>SB_3949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 155 RYWHVSDWKHSAEDVSKVEYQFQ----NLFNGNRDLAKTIHDFANSNWR 199
           RY + S ++ SA++   V++ F     + F+ N +L KT++ F  ++W+
Sbjct: 9   RYPYYSRFRFSADEHGDVQFNFNGDEYDPFDKNGNLVKTLYRFLGNSWK 57


>SB_2520| Best HMM Match : Fer2 (HMM E-Value=5.2)
          Length = 453

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 155 RYWHVSDWKHSAEDVSKVEYQFQ----NLFNGNRDLAKTIHDFANSNWR 199
           RY + S ++ SA++   V++ F     + F+ N +L KT++ F  ++W+
Sbjct: 176 RYPYYSRFRFSADEHGNVQFVFNGDEYDPFDKNGNLVKTLYHFPGNSWK 224


>SB_27385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 155 RYWHVSDWKHSAEDVSKVEYQFQ----NLFNGNRDLAKTIHDFANSNWR 199
           RY + S ++ SA++   V++ F     + F+ N +L KT++ F  ++W+
Sbjct: 179 RYPYYSRFRFSADEHGDVQFVFNGDEYDPFDKNGNLVKTLYHFPGNSWK 227


>SB_10908| Best HMM Match : Cytochrom_B562 (HMM E-Value=3.4)
          Length = 389

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 155 RYWHVSDWKHSAEDVSKVEYQFQ----NLFNGNRDLAKTIHDFANSNWR 199
           RY + S ++ SA++   V++ F     + F+ N +L KT++ F  ++W+
Sbjct: 78  RYPYYSRFRFSADEHGDVQFVFNGDEYDPFDKNGNLVKTLYHFPGNSWK 126


>SB_49789| Best HMM Match : IncA (HMM E-Value=0.47)
          Length = 674

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 155 RYWHVSDWKHSAEDVSKVEYQFQ----NLFNGNRDLAKTIHDFANSNWR 199
           RY + S ++ SA++   V++ F     + F+ N +L KT++ F   +W+
Sbjct: 179 RYPYYSRFRFSADEHGDVQFVFNGDEYDPFDKNGNLVKTLYHFPGDSWK 227


>SB_33256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 99  KTLLDLKCSVTLV----GEYT-LGGQLLILPIEGTGKYXXXXXXXXXXXXLDVEERIVEG 153
           + LL  KC   LV    G++  LGG +  L  E TGKY               +  +   
Sbjct: 300 RPLLKPKCEYVLVTRNGGQHNKLGGLMSKLVFEATGKYVHPTRYRQIAETSSCKV-LKSA 358

Query: 154 DRYWHVSDWKHSAEDVSKVEYQFQ 177
           DR     D KHS+ +V+KV Y+ Q
Sbjct: 359 DRSAISEDQKHSS-NVAKVHYRKQ 381


>SB_17725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 155 RYWHVSDWKHSAEDVSKVEYQFQ----NLFNGNRDLAKTIHDFANSNWR 199
           RY + S ++ SA++   V++ F     + F+ N +L KT++ F   +W+
Sbjct: 9   RYPYYSRFRFSADEHGDVQFVFNGDEYDPFDKNGNLVKTLYHFPGDSWK 57


>SB_23275| Best HMM Match : IncA (HMM E-Value=0.43)
          Length = 1176

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 155 RYWHVSDWKHSAEDVSKVEYQFQ----NLFNGNRDLAKTIHDFANSNWR 199
           RY + S ++ SA++   V++ F     + F+ N +L KT++ F   +W+
Sbjct: 681 RYPYYSRFRFSADEHGDVQFVFNGDEYDPFDKNGNLVKTLYHFPGDSWK 729


>SB_11599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 155 RYWHVSDWKHSAEDVSKVEYQFQ----NLFNGNRDLAKTIHDFANSNWR 199
           RY + S ++ SA++   V++ F     + F+ N +L KT++ F   +W+
Sbjct: 9   RYPYYSRFRFSADEHGDVQFVFNGDEYDPFDKNGNLVKTLYHFPGDSWK 57


>SB_818| Best HMM Match : Gelsolin (HMM E-Value=6.4)
          Length = 119

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 155 RYWHVSDWKHSAEDVSKVEYQFQ----NLFNGNRDLAKTIHDFANSNWR 199
           RY + S ++ SA +   V++ F     + F+ N +L KT++ F  ++W+
Sbjct: 9   RYPYYSRFRFSANEHGNVQFVFNGDEYDPFDKNGNLVKTLYHFPGNSWK 57


>SB_56144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 155 RYWHVSDWKHSAEDVSKVEYQFQ----NLFNGNRDLAKTIHDFANSNWR 199
           RY + S ++ SA+    V++ F     + F+ N +L KT++ F  ++W+
Sbjct: 9   RYPYYSRFRFSADGHGNVQFVFNGDEYDPFDKNGNLVKTLYHFPGNSWK 57


>SB_55205| Best HMM Match : DUF1270 (HMM E-Value=3.7)
          Length = 600

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 155 RYWHVSDWKHSAEDVSKVEYQFQ----NLFNGNRDLAKTIHDFANSNWR 199
           RY + S ++ SA++   V++ F     + F+ N +L KT++ F  ++W+
Sbjct: 9   RYPYYSRFRFSADEHGDVQFIFNGDEYDPFDKNGNLVKTLYRFPGNSWK 57


>SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1880

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 155 RYWHVSDWKHSAEDVSKVEYQFQ----NLFNGNRDLAKTIHDFANSNWR 199
           RY + S ++ SA++   V++ F     + F+ N +L KT++ F  ++W+
Sbjct: 9   RYPYYSRFRFSADEHGDVQFIFNGDEYDPFDKNGNLVKTLYRFPGNSWK 57


>SB_16978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 33  ACLKSSAQKAVPFLAAGIADLGIETMDPMTVGRV 66
           AC++S+A  A+P L +G+ +   + + P  +G +
Sbjct: 683 ACVESAASGAMPSLGSGLCERQCKNLIPFLIGAI 716


>SB_7786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 155 RYWHVSDWKHSAEDVSKVEYQFQ----NLFNGNRDLAKTIHDFANSNWR 199
           RY + S ++ SA++    ++ F     + F+ N +L KT++ F  ++W+
Sbjct: 57  RYPYYSRFRFSADEHGNAQFVFNGDEYDPFDKNGNLVKTLYHFPGNSWK 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,538,100
Number of Sequences: 59808
Number of extensions: 218787
Number of successful extensions: 462
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 19
length of query: 236
length of database: 16,821,457
effective HSP length: 80
effective length of query: 156
effective length of database: 12,036,817
effective search space: 1877743452
effective search space used: 1877743452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)