GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001324-TA|BGIBMGA001324-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (236 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23646-9|AAM48529.1|  379|Caenorhabditis elegans Hypothetical pr...    28   5.1  
L23646-8|AAM48530.1|  411|Caenorhabditis elegans Hypothetical pr...    28   5.1  
L23646-7|AAA28038.3|  471|Caenorhabditis elegans Hypothetical pr...    28   5.1  
L23646-6|AAU87821.1|  469|Caenorhabditis elegans Hypothetical pr...    28   5.1  

>L23646-9|AAM48529.1|  379|Caenorhabditis elegans Hypothetical
           protein F44E2.7b protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 196 SNWREIFQEVAPPMVKAIVSKIIHETFK 223
           S WREI  +   P V A+V KI+ E+ K
Sbjct: 143 SRWREIESDSDKPEVTALVKKILEESKK 170


>L23646-8|AAM48530.1|  411|Caenorhabditis elegans Hypothetical
           protein F44E2.7c protein.
          Length = 411

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 196 SNWREIFQEVAPPMVKAIVSKIIHETFK 223
           S WREI  +   P V A+V KI+ E+ K
Sbjct: 175 SRWREIESDSDKPEVTALVKKILEESKK 202


>L23646-7|AAA28038.3|  471|Caenorhabditis elegans Hypothetical
           protein F44E2.7a protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 196 SNWREIFQEVAPPMVKAIVSKIIHETFK 223
           S WREI  +   P V A+V KI+ E+ K
Sbjct: 235 SRWREIESDSDKPEVTALVKKILEESKK 262


>L23646-6|AAU87821.1|  469|Caenorhabditis elegans Hypothetical
           protein F44E2.7d protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 196 SNWREIFQEVAPPMVKAIVSKIIHETFK 223
           S WREI  +   P V A+V KI+ E+ K
Sbjct: 233 SRWREIESDSDKPEVTALVKKILEESKK 260


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,896,667
Number of Sequences: 27539
Number of extensions: 169290
Number of successful extensions: 400
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 4
length of query: 236
length of database: 12,573,161
effective HSP length: 79
effective length of query: 157
effective length of database: 10,397,580
effective search space: 1632420060
effective search space used: 1632420060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)