GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001324-TA|BGIBMGA001324-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (236 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    63   2e-12
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   4.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.5  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 62.9 bits (146), Expect = 2e-12
 Identities = 50/209 (23%), Positives = 96/209 (45%), Gaps = 16/209 (7%)

Query: 34  CLKSSAQKAVPFLAAGIADLGIETMDPMTVGRVNTVQAG----LHMDFRDTTXXXXXXXX 89
           C+  + + AV  LA G+    I  ++P+ V  V   ++     L  ++++          
Sbjct: 43  CIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNL 102

Query: 90  XXXXXXXH-DKTLLDLKC---SVTLVGEYTLGGQLLILPIEGTGKYXXXXXXXXXXXXLD 145
                    DK +L  +     V  V +Y + G++L+LP+ G GK             + 
Sbjct: 103 EIKNYNIDWDKCILSSESYNPQVDFVADYKIEGKVLLLPVRGAGKSNITMYDLKSHNDIY 162

Query: 146 VEERIVEGDRYWHVSDWKHSAE-DVSKVEYQFQNLFNGNRDLAKTIHDFANSNWREIFQE 204
            E+    G+ Y  +   KH+ + + +KV+ +F+NLF+GN++L + ++ F N N   +F+E
Sbjct: 163 CEKYEKNGETYLRIK--KHAVKFNPAKVKLRFENLFDGNKELGEQMNRFINENSELLFKE 220

Query: 205 VAPPMVKA---IVSKIIHETFKL--FDKV 228
           +     +    + +KI +E F    FDK+
Sbjct: 221 LQAAYEETFSLVFTKIDNEIFNRVPFDKI 249


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
          protein protein.
          Length = 166

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/22 (31%), Positives = 15/22 (68%)

Query: 44 PFLAAGIADLGIETMDPMTVGR 65
          PFL++ ++ + +  + P T+GR
Sbjct: 4  PFLSSSVSTVIVTALTPSTLGR 25


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 8   FACAFVASDATDLAKFITPCRPK 30
           FA   VAS   +LA F+   RPK
Sbjct: 646 FAMIIVASYTANLAAFLVLERPK 668


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,144
Number of Sequences: 429
Number of extensions: 2069
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 236
length of database: 140,377
effective HSP length: 56
effective length of query: 180
effective length of database: 116,353
effective search space: 20943540
effective search space used: 20943540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)