GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001324-TA|BGIBMGA001324-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (236 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38820.2 68415.m04769 expressed protein contains Pfam profile...    30   1.6  
At5g53200.1 68418.m06613 myb family transcription factor (TRIPTY...    28   4.8  
At1g03830.1 68414.m00364 guanylate-binding family protein contai...    28   6.3  

>At2g38820.2 68415.m04769 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 310

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 2   LVLCFLFACAFVASDATDLAKFITPCRPKDTACLKSSAQKAV 43
           LVLC       + +D T +A+    C+ KD +CLKS A   V
Sbjct: 127 LVLCKSIRVRNLLTDVTKIAETSKNCKLKDGSCLKSVANGLV 168


>At5g53200.1 68418.m06613 myb family transcription factor
           (TRIPTYCHON) contains Pfam profile: PF00249 myb-like
           DNA-binding domain
          Length = 106

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 164 HSAEDVSKVEYQFQNLFNGNRDLAKTIHDFANSNW 198
           H +E+VS +E++F N+     DL   ++      W
Sbjct: 18  HDSEEVSSIEWEFINMTEQEEDLIFRMYRLVGDRW 52


>At1g03830.1 68414.m00364 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 991

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 162 WKHSAEDVSKVEYQFQNLFNGNRDLAKTIHDFANSNWREI 201
           ++ + +D+ K+  QF+N  N      K+IHD  +SN  E+
Sbjct: 439 YESAIDDICKLSDQFKNRINDLESKCKSIHD-EHSNLMEV 477


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,712,487
Number of Sequences: 28952
Number of extensions: 162891
Number of successful extensions: 368
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 3
length of query: 236
length of database: 12,070,560
effective HSP length: 79
effective length of query: 157
effective length of database: 9,783,352
effective search space: 1535986264
effective search space used: 1535986264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)