Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001323-TA|BGIBMGA001323-PA|IPR002347|Glucose/ribitol
dehydrogenase, IPR002198|Short-chain dehydrogenase/reductase SDR
         (254 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    47   2e-07
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.2  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   2.0  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   2.0  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.2  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 46.8 bits (106), Expect = 2e-07
 Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 10/141 (7%)

Query: 58  ITADLTKESDIEKIIKKTIDHYGKLDVLVNNAGIIETGTIENTSLAQYDRLMNTNVRSIY 117
           +  DL+ ++DI K+I+    + G +D+L+NNA I    T++N  +  + ++ + N+  + 
Sbjct: 61  LQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLT 120

Query: 118 YLTMLAVPHLLESK----GXXXXXXXXXGIRSFP---GVLAYNISKASVDQFTRCVALEL 170
            + +  V  L++ K    G         G+   P      AY  SK ++   T C+  EL
Sbjct: 121 CM-IQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSEL 179

Query: 171 A--PKGVRVNCVNPGVILTEL 189
           A     ++V  ++P ++ T++
Sbjct: 180 AQCESNIKVISISPDLVETDM 200


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 62  LTKESDIEKIIKKTI-DHYGKLD-VLVNNAGIIETGTIENTSL 102
           LT++  +  +    I DH G +  V++ N+G++     E+TSL
Sbjct: 215 LTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQDESTSL 257


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 62  LTKESDIEKIIKKTI-DHYGKLD-VLVNNAGIIETGTIENTSL 102
           LT++  +  +    I DH G +  V++ N+G++     E+TSL
Sbjct: 215 LTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQDESTSL 257


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 188 ELQRRGGLSEEQYAAFLERTKETHALGRPGKPDEVAATIAFLASDLASNIT 238
           E ++    +E++Y  + ER+KE     R  +  +    I+ L+++  SNI+
Sbjct: 44  EREQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNNYISNIS 94


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 188 ELQRRGGLSEEQYAAFLERTKETHALGRPGKPDEVAATIAFLASDLASNIT 238
           E ++    +E++Y  + ER+KE     R  +  +    I+ L+++  SNI+
Sbjct: 44  EREQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNNYISNIS 94


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 122 LAVPHLLESKGXXXXXXXXXGIRSFPGVLAYNISKASVDQFTR 164
           L   H L+S           G  SF G+L++ + K +++  T+
Sbjct: 278 LPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQ 320


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 227 AFLASDLASNITGASVPVDGGRHAMC 252
           A LA+D   N+    +  D G H  C
Sbjct: 96  AILANDFMKNLELTQIRRDRGLHVSC 121


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,250
Number of Sequences: 429
Number of extensions: 2003
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 9
length of query: 254
length of database: 140,377
effective HSP length: 56
effective length of query: 198
effective length of database: 116,353
effective search space: 23037894
effective search space used: 23037894
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)