GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001323-TA|BGIBMGA001323-PA|IPR002347|Glucose/ribitol
dehydrogenase, IPR002198|Short-chain dehydrogenase/reductase SDR
         (254 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.74 
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   6.9  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    21   6.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 57  SITADLTKESDIEKIIKKTIDHYGKLD 83
           S T+D  +E+D E ++KK +D   +L+
Sbjct: 851 SPTSDKAQEADGEVVVKKEVDEEERLE 877


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 29  GAQLSLTGRNVENLQKVSKD 48
           G    L  + +EN+ K+ KD
Sbjct: 92  GTTFKLVAKTLENMTKIDKD 111


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 29  GAQLSLTGRNVENLQKVSKD 48
           G    L  + +EN+ K+ KD
Sbjct: 92  GTTFKLVAKTLENMTKIDKD 111


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,874
Number of Sequences: 317
Number of extensions: 1703
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 254
length of database: 114,650
effective HSP length: 55
effective length of query: 199
effective length of database: 97,215
effective search space: 19345785
effective search space used: 19345785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)