Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001322-TA|BGIBMGA001322-PA|IPR000626|Ubiquitin
         (74 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...    21   1.8  
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    21   1.8  
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...    21   1.8  
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    21   1.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   3.2  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    19   4.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    19   4.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    19   4.2  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    18   9.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    18   9.7  

>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
          protein.
          Length = 76

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 28 QENIEPWRQRWFYGGKLLGD 47
          +E I P +QR  + GK L D
Sbjct: 33 KEGIPPDQQRLIFAGKQLED 52


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
          protein.
          Length = 685

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 28 QENIEPWRQRWFYGGKLLGD 47
          +E I P +QR  + GK L D
Sbjct: 33 KEGIPPDQQRLIFAGKQLED 52



 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 28  QENIEPWRQRWFYGGKLLGD 47
           +E I P +QR  + GK L D
Sbjct: 109 KEGIPPDQQRLIFAGKQLED 128



 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 28  QENIEPWRQRWFYGGKLLGD 47
           +E I P +QR  + GK L D
Sbjct: 185 KEGIPPDQQRLIFAGKQLED 204



 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 28  QENIEPWRQRWFYGGKLLGD 47
           +E I P +QR  + GK L D
Sbjct: 261 KEGIPPDQQRLIFAGKQLED 280



 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 28  QENIEPWRQRWFYGGKLLGD 47
           +E I P +QR  + GK L D
Sbjct: 337 KEGIPPDQQRLIFAGKQLED 356



 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 28  QENIEPWRQRWFYGGKLLGD 47
           +E I P +QR  + GK L D
Sbjct: 489 KEGIPPDQQRLIFAGKQLED 508



 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 28  QENIEPWRQRWFYGGKLLGD 47
           +E I P +QR  + GK L D
Sbjct: 565 KEGIPPDQQRLIFAGKQLED 584



 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 28  QENIEPWRQRWFYGGKLLGD 47
           +E I P +QR  + GK L D
Sbjct: 641 KEGIPPDQQRLIFAGKQLED 660



 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 28  QENIEPWRQRWFYGGKLLGD 47
           +E I P +QR  + GK L D
Sbjct: 413 KEGIPPDQQRSIFAGKQLED 432


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
          protein.
          Length = 64

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 28 QENIEPWRQRWFYGGKLLGD 47
          +E I P +QR  + GK L D
Sbjct: 33 KEGIPPDQQRLIFAGKQLED 52


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
          protein.
          Length = 112

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 28 QENIEPWRQRWFYGGKLLGD 47
          +E I P +QR  + GK L D
Sbjct: 5  KEGIPPDQQRLIFAGKQLED 24



 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 28  QENIEPWRQRWFYGGKLLGD 47
           +E I P +QR  + GK L D
Sbjct: 81  KEGIPPDQQRSIFAGKQLED 100


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 9/30 (30%), Positives = 11/30 (36%)

Query: 13  DVRRLSLRADPFASAQENIEPWRQRWFYGG 42
           D+ R    A P  SA      W+  W   G
Sbjct: 341 DLFRTMANAAPGNSASNRHSAWQSHWLNKG 370


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 50  LVEEAKITPG--YVVQVIVSTDPQP 72
           L++E K   G  YV+ V VS +P P
Sbjct: 159 LLQEMKQAFGSKYVLSVTVSANPLP 183


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 27   AQENIEPWRQRWFYGGKLL 45
            +Q + E     WFY G L+
Sbjct: 1163 SQPSDEVMENSWFYDGPLI 1181


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 27   AQENIEPWRQRWFYGGKLL 45
            +Q + E     WFY G L+
Sbjct: 1163 SQPSDEVMENSWFYDGPLI 1181


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 57  TPGYVVQVIVSTDPQPP 73
           TP  + Q+  + DPQ P
Sbjct: 278 TPFILAQLWATWDPQSP 294


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 44  LLGDRLLVEEAKITPGY 60
           +L  +L+VE AK  PG+
Sbjct: 363 ILTVQLIVEFAKRLPGF 379


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.140    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,298
Number of Sequences: 317
Number of extensions: 616
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of query: 74
length of database: 114,650
effective HSP length: 45
effective length of query: 29
effective length of database: 100,385
effective search space:  2911165
effective search space used:  2911165
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.1 bits)
S2: 35 (18.2 bits)