Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001322-TA|BGIBMGA001322-PA|IPR000626|Ubiquitin
         (74 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9270| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.10 
SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018)                 26   3.8  
SB_55607| Best HMM Match : ig (HMM E-Value=4.6e-17)                    25   6.6  
SB_15034| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.6  
SB_11911| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)             25   8.8  

>SB_9270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 21 ADPFASAQENIEPWRQRWFYGGKLLGDRLLVEEAKITPGYVVQV 64
          +DP A       PWR+ +FY   ++    L +E K++PG V+ +
Sbjct: 44 SDPEAIVSRRWRPWRKVYFY--MVIVYNFLADEGKLSPGQVMSI 85


>SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018)
          Length = 491

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 13  DVRRLSLRADPFASAQENIEPWRQRWFYGGKLLGDRLLVEEAKITPGYVVQVIVSTDPQP 72
           DVR ++ +A PF+  + +I P R R    G++   RL    +K  P   +  +  T  +P
Sbjct: 177 DVRPIASKAGPFSPEKGDIAPKRPRLDSEGRM---RLNTVSSKPPPLKPIASLAPTVSRP 233

Query: 73  P 73
           P
Sbjct: 234 P 234


>SB_55607| Best HMM Match : ig (HMM E-Value=4.6e-17)
          Length = 274

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 39 FYGGKLLGDRLLVEEAKITPGYVVQVIVSTDPQP 72
          FYG  ++  R  V EAK+     V  + +  P+P
Sbjct: 2  FYGPPIITSRSNVHEAKVGSDVAVACVATGSPKP 35


>SB_15034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 36 QRWFYGGKLLGDRLLVEEAKITPGYVVQVIV 66
          Q+W YGG+L  D  +V E   T G ++ V V
Sbjct: 42 QKWIYGGRLTLD--VVYEVTTTLGDILYVFV 70


>SB_11911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 1  MLQKLIHWNILFDVRRLSLRAD 22
          +LQ L+H  ++F+V +LS R D
Sbjct: 13 LLQNLVHATMIFEVAKLSDRYD 34


>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
          Length = 198

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 14 VRRLSLRADPFASAQENIEPWRQRWFYGGKLLGDRLLVEE 53
          V+ L      F  ++E I   RQR  + GK+L D   ++E
Sbjct: 5  VKTLDSETRTFTVSEEGIPAERQRLIFKGKVLQDEKKLKE 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.140    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,222
Number of Sequences: 59808
Number of extensions: 78126
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 6
length of query: 74
length of database: 16,821,457
effective HSP length: 52
effective length of query: 22
effective length of database: 13,711,441
effective search space: 301651702
effective search space used: 301651702
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)