Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001322-TA|BGIBMGA001322-PA|IPR000626|Ubiquitin
         (74 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16570.1 68417.m02508 protein arginine N-methyltransferase-re...    29   0.28 
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER...    28   0.65 
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER...    28   0.87 
At5g15010.1 68418.m01760 pentatricopeptide (PPR) repeat-containi...    25   4.6  
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ...    25   8.1  
At3g29750.1 68416.m03756 hypothetical protein                          25   8.1  
At1g20800.1 68414.m02605 F-box family protein contains Pfam:PF00...    25   8.1  

>At4g16570.1 68417.m02508 protein arginine
           N-methyltransferase-related contains weak similarity to
           protein arginine N-methyltransferase 2 (EC 2.1.1.-)
           (Swiss-Prot:P55345) [Homo sapiens]
          Length = 724

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 19  LRADPFASAQENIEPWRQRWFYGGKLLGDRLLVEEAKITP 58
           L  +P+ S  EN  PW+   F+  + L D +L E+A + P
Sbjct: 516 LIGEPYYSGLENGLPWQNLRFWKDRTLLDSVLSEDAVVMP 555


>At1g31340.1 68414.m03835 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 156

 Score = 28.3 bits (60), Expect = 0.65
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 28  QENIEPWRQRWFYGGKLLGDRLLVEEAKITPGYVVQVIVS 67
           +E I P +QR  Y GK L D    ++  I  G V+ ++++
Sbjct: 109 KEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLA 148


>At2g35635.1 68415.m04370 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 154

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 28  QENIEPWRQRWFYGGKLLGDRLLVEEAKITPGYVVQVIVS 67
           +E I P +QR  Y GK L D    ++  I  G V+ ++++
Sbjct: 109 KEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLA 148


>At5g15010.1 68418.m01760 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 532

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 29  ENIEPWRQRWFYGGKLLGDRLLVEEAKITPGYVVQ 63
           EN+E   Q WF G +    R+   + ++  G +V+
Sbjct: 470 ENVEDMIQSWFSGKQYAEQRITDSKGEVNKGAIVK 504


>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 519

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)

Query: 6   IHWNILFDVRRLSLRADPF 24
           IH NILFD+R  S+ ++PF
Sbjct: 363 IHMNILFDIRCSSI-SEPF 380


>At3g29750.1 68416.m03756 hypothetical protein
          Length = 421

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 42  GKLLGDRLLVEEAKITPGYVVQVIVSTD 69
           G  LG RL V+E +IT  +++  +  TD
Sbjct: 180 GTCLGIRLWVQEVEITENFLLLDLAKTD 207


>At1g20800.1 68414.m02605 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 492

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 31  IEPWRQRWFYG-GKLLGDRLLVEE 53
           I P+ Q  F   GK+LG RL++EE
Sbjct: 131 ISPYAQSLFKKKGKILGKRLMIEE 154


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.140    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,414
Number of Sequences: 28952
Number of extensions: 58930
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 9
length of query: 74
length of database: 12,070,560
effective HSP length: 54
effective length of query: 20
effective length of database: 10,507,152
effective search space: 210143040
effective search space used: 210143040
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)