GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001322-TA|BGIBMGA001322-PA|IPR000626|Ubiquitin
         (74 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0031 + 25760878-25761342                                         33   0.037
09_04_0148 + 15106392-15106484,15107517-15107776,15107920-15108028     28   0.80 
06_03_0944 + 26202053-26202229,26203788-26204047,26204145-262042...    28   0.80 
11_03_0129 - 10447736-10448356,10450418-10450504,10450632-104507...    26   3.2  
01_06_1230 + 35575840-35576020,35576122-35576170,35576365-355764...    25   9.8  

>01_06_0031 + 25760878-25761342
          Length = 154

 Score = 32.7 bits (71), Expect = 0.037
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 28  QENIEPWRQRWFYGGKLLGDRLLVEEAKITPGYVVQVIVS 67
           +E I P +QR  YGGK L D     + KI  G V+ ++++
Sbjct: 109 REGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLA 148


>09_04_0148 + 15106392-15106484,15107517-15107776,15107920-15108028
          Length = 153

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 28  QENIEPWRQRWFYGGKLLGDRLLVEEAKITPGYVVQVIVS 67
           +E I P +QR  Y GK L D    ++  I  G V+ ++++
Sbjct: 109 KEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLA 148


>06_03_0944 +
           26202053-26202229,26203788-26204047,26204145-26204245,
           26204512-26204584,26205482-26205581
          Length = 236

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 28  QENIEPWRQRWFYGGKLLGDRLLVEEAKITPGYVVQVIVS 67
           +E I P +QR  Y GK L D    ++  I  G V+ ++++
Sbjct: 137 KEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLA 176


>11_03_0129 -
           10447736-10448356,10450418-10450504,10450632-10450742,
           10453876-10453935,10454262-10454345,10455200-10455298
          Length = 353

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 28  QENIEPWRQRWFYGGKLLGDRLLVEEAKITPGYVVQVIVS 67
           +E I    Q   Y G+ LGD  ++ E  ++  +++ V+VS
Sbjct: 185 KEGIHLDNQILMYAGRHLGDSQILSECGLSDDHILHVLVS 224


>01_06_1230 +
           35575840-35576020,35576122-35576170,35576365-35576441,
           35576883-35577145,35577241-35577387,35578569-35578766
          Length = 304

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 31  IEPWRQRWFYGGKLLGDRLLVEEAKITPGYVVQVIVSTDPQP 72
           +EP RQR F+ GK   D   +  A +  G   ++++   P P
Sbjct: 115 VEPERQRLFFRGKEKSDNEFLHTAGVKDG--AKLLLLEKPAP 154


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.140    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,743
Number of Sequences: 37544
Number of extensions: 76980
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 8
length of query: 74
length of database: 14,793,348
effective HSP length: 54
effective length of query: 20
effective length of database: 12,765,972
effective search space: 255319440
effective search space used: 255319440
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)