Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001322-TA|BGIBMGA001322-PA|IPR000626|Ubiquitin
(74 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99266-1|CAB16464.1| 292|Caenorhabditis elegans F15C11.2 protein. 26 2.8
Z98262-3|CAD44156.1| 454|Caenorhabditis elegans Hypothetical pr... 26 2.8
Z98262-2|CAD44155.1| 484|Caenorhabditis elegans Hypothetical pr... 26 2.8
Z98262-1|CAB10932.1| 502|Caenorhabditis elegans Hypothetical pr... 26 2.8
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 26 2.8
Z71260-4|CAD44116.1| 454|Caenorhabditis elegans Hypothetical pr... 26 2.8
Z71260-3|CAD44115.1| 484|Caenorhabditis elegans Hypothetical pr... 26 2.8
Z71260-2|CAA95799.1| 502|Caenorhabditis elegans Hypothetical pr... 26 2.8
AF003137-9|AAB93646.3| 883|Caenorhabditis elegans Hypothetical ... 26 2.8
M77697-3|AAA27898.3| 616|Caenorhabditis elegans Hypothetical pr... 25 4.9
AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical ... 25 6.4
AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival... 25 6.4
Z73970-1|CAA98244.1| 254|Caenorhabditis elegans Hypothetical pr... 25 8.5
>Z99266-1|CAB16464.1| 292|Caenorhabditis elegans F15C11.2
protein.
Length = 292
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 40 YGGKLLGDRLLVEEAKITPGYVVQVIVSTDPQP 72
Y GK+L D + + KI G+ V +++ +P
Sbjct: 52 YTGKILKDEETLTQHKIADGHTVHLVIRNQARP 84
>Z98262-3|CAD44156.1| 454|Caenorhabditis elegans Hypothetical
protein F15C11.2c protein.
Length = 454
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 40 YGGKLLGDRLLVEEAKITPGYVVQVIVSTDPQP 72
Y GK+L D + + KI G+ V +++ +P
Sbjct: 52 YTGKILKDEETLTQHKIADGHTVHLVIRNQARP 84
>Z98262-2|CAD44155.1| 484|Caenorhabditis elegans Hypothetical
protein F15C11.2b protein.
Length = 484
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 40 YGGKLLGDRLLVEEAKITPGYVVQVIVSTDPQP 72
Y GK+L D + + KI G+ V +++ +P
Sbjct: 52 YTGKILKDEETLTQHKIADGHTVHLVIRNQARP 84
>Z98262-1|CAB10932.1| 502|Caenorhabditis elegans Hypothetical
protein F15C11.2a protein.
Length = 502
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 40 YGGKLLGDRLLVEEAKITPGYVVQVIVSTDPQP 72
Y GK+L D + + KI G+ V +++ +P
Sbjct: 52 YTGKILKDEETLTQHKIADGHTVHLVIRNQARP 84
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 28 QENIEPWRQRWFYGGKLLGDRLLVEEAKITPGYVVQVIVS 67
+E I P +QR + GK + D + K+ G V+ ++++
Sbjct: 33 KEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLA 72
>Z71260-4|CAD44116.1| 454|Caenorhabditis elegans Hypothetical
protein F15C11.2c protein.
Length = 454
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 40 YGGKLLGDRLLVEEAKITPGYVVQVIVSTDPQP 72
Y GK+L D + + KI G+ V +++ +P
Sbjct: 52 YTGKILKDEETLTQHKIADGHTVHLVIRNQARP 84
>Z71260-3|CAD44115.1| 484|Caenorhabditis elegans Hypothetical
protein F15C11.2b protein.
Length = 484
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 40 YGGKLLGDRLLVEEAKITPGYVVQVIVSTDPQP 72
Y GK+L D + + KI G+ V +++ +P
Sbjct: 52 YTGKILKDEETLTQHKIADGHTVHLVIRNQARP 84
>Z71260-2|CAA95799.1| 502|Caenorhabditis elegans Hypothetical
protein F15C11.2a protein.
Length = 502
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 40 YGGKLLGDRLLVEEAKITPGYVVQVIVSTDPQP 72
Y GK+L D + + KI G+ V +++ +P
Sbjct: 52 YTGKILKDEETLTQHKIADGHTVHLVIRNQARP 84
>AF003137-9|AAB93646.3| 883|Caenorhabditis elegans Hypothetical
protein C27A12.9 protein.
Length = 883
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 18 SLRADPFASAQENIEPWRQRWFYGGKLLGDRLLVEEAKITPG 59
+LR D EN + ++ W+Y G++ LV+ ++ G
Sbjct: 65 ALRYDFLIPIDENTKKSKEEWYYRGQMKNIEKLVKSGNVSIG 106
>M77697-3|AAA27898.3| 616|Caenorhabditis elegans Hypothetical
protein B0303.4 protein.
Length = 616
Score = 25.4 bits (53), Expect = 4.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 37 RWFYGGKLLG-DRLLVEEAKITPGYVVQVIVSTDP 70
R Y G+LL D +EE + PG +V +ST P
Sbjct: 382 RLIYQGQLLREDHRTLEEYGLQPGSIVHCHISTTP 416
>AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical
protein Y48C3A.7 protein.
Length = 813
Score = 25.0 bits (52), Expect = 6.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 44 LLGDRLLVEEAKITPGYV 61
L GD L + AK+TPGYV
Sbjct: 419 LAGDVTLKQIAKLTPGYV 436
>AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival
CED-4-interactingprotein MAC-1 protein.
Length = 813
Score = 25.0 bits (52), Expect = 6.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 44 LLGDRLLVEEAKITPGYV 61
L GD L + AK+TPGYV
Sbjct: 419 LAGDVTLKQIAKLTPGYV 436
>Z73970-1|CAA98244.1| 254|Caenorhabditis elegans Hypothetical
protein C29A12.1 protein.
Length = 254
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/45 (28%), Positives = 17/45 (37%)
Query: 28 QENIEPWRQRWFYGGKLLGDRLLVEEAKITPGYVVQVIVSTDPQP 72
Q N+ W Q+W G L D L ++ V I D P
Sbjct: 37 QRNLVAWAQKWMDGAGTLTDELEDFSIRVHVAETVSEINPADNAP 81
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.140 0.447
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,969
Number of Sequences: 27539
Number of extensions: 59578
Number of successful extensions: 137
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 13
length of query: 74
length of database: 12,573,161
effective HSP length: 54
effective length of query: 20
effective length of database: 11,086,055
effective search space: 221721100
effective search space used: 221721100
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)
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