GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001322-TA|BGIBMGA001322-PA|IPR000626|Ubiquitin
         (74 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   1.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    19   6.4  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    19   8.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 1.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 61  VVQVIVSTDPQPPS 74
           +VQ++V   PQPP+
Sbjct: 899 LVQLLVQEPPQPPN 912


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 1.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 61  VVQVIVSTDPQPPS 74
           +VQ++V   PQPP+
Sbjct: 895 LVQLLVQEPPQPPN 908


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.0 bits (37), Expect = 6.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 26  SAQENIEPWRQRWFYGGKLLGDRLLVEEAKITPGY 60
           S  E+I  ++ R      +L  +L+VE +K  PG+
Sbjct: 365 SEGEDISDYKFRHITEITILTVQLIVEFSKRLPGF 399


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
          dehydrogenase/reductase protein.
          Length = 246

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 48 RLLVEEAKITPGYVV 62
          + LVEE K  PG +V
Sbjct: 45 KTLVEELKSKPGKLV 59


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.140    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,969
Number of Sequences: 429
Number of extensions: 639
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 74
length of database: 140,377
effective HSP length: 46
effective length of query: 28
effective length of database: 120,643
effective search space:  3378004
effective search space used:  3378004
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.6 bits)
S2: 36 (18.6 bits)