Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001321-TA|BGIBMGA001321-PA|undefined
         (236 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32413| Best HMM Match : HEAT (HMM E-Value=0.00039)                 151   6e-37

>SB_32413| Best HMM Match : HEAT (HMM E-Value=0.00039)
          Length = 695

 Score =  151 bits (365), Expect = 6e-37
 Identities = 82/174 (47%), Positives = 109/174 (62%), Gaps = 9/174 (5%)

Query: 1   MGGCIGITRSGSGHIEESSGTVSRPNSGGLRKNQSLCHETIRWKSDVPLTEGQLRSKRDE 60
           MGGC+G     S  +  SS   S P    L KNQ L  E  +W SD+PLTEGQLRSKRDE
Sbjct: 1   MGGCMGTGHDPSVRVS-SSEFGSTPGVT-LGKNQPLKKERQQWTSDIPLTEGQLRSKRDE 58

Query: 61  FWDTAPAFDGRKEIWDXXXXXXXXXXXMDFQLAQAILDGASVSVPNGYLTECYDEWGTRY 120
           FW+TAPAF+GRKEIWD            D  LAQAI+DGA++++P G L + YDE GTRY
Sbjct: 59  FWETAPAFEGRKEIWDALRAAAETD---DHTLAQAIVDGANITLPTGSLQDAYDELGTRY 115

Query: 121 QVPIYCLSPPINMVK--EASGR-DSPAEWSEPAEGGAEVTLRLRLSSSCRDVEL 171
            +P+YC+S P N++K  + SG   +  +  E    G E  ++LRLS+  +D+++
Sbjct: 116 VLPVYCISQPTNLIKDDDVSGDISNEVDEKETPPTGEETYVKLRLSTG-KDLKM 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.135    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,559,555
Number of Sequences: 59808
Number of extensions: 336215
Number of successful extensions: 721
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 1
length of query: 236
length of database: 16,821,457
effective HSP length: 80
effective length of query: 156
effective length of database: 12,036,817
effective search space: 1877743452
effective search space used: 1877743452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)