Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001321-TA|BGIBMGA001321-PA|undefined
         (236 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53400.1 68414.m06053 expressed protein                             97   9e-21
At5g45740.1 68418.m05623 hypothetical protein                          91   8e-19
At1g16960.1 68414.m02059 expressed protein                             89   2e-18
At5g34885.1 68418.m04110 expressed protein                             29   2.1  
At4g33500.1 68417.m04758 protein phosphatase 2C-related / PP2C-r...    29   2.7  
At5g34887.1 68418.m04111 expressed protein                             27   8.4  

>At1g53400.1 68414.m06053 expressed protein
          Length = 114

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 46/94 (48%), Positives = 57/94 (60%), Gaps = 4/94 (4%)

Query: 43  WKSDVPLTEGQLRSKRDEFWDTAPAFDGRKEIWDXXXXXXXXXXXMDFQLAQAILDGASV 102
           WK   P+T+ +L   R+EFWDTAP + GRKEIWD            D  LAQAI+D A V
Sbjct: 24  WKHTQPITKAELMKLREEFWDTAPHYGGRKEIWDALRAAAEA----DISLAQAIVDSAGV 79

Query: 103 SVPNGYLTECYDEWGTRYQVPIYCLSPPINMVKE 136
            V N  LT CYDE G +Y++P Y LS P N+ +E
Sbjct: 80  IVQNTDLTVCYDERGAKYELPKYVLSEPTNLEEE 113


>At5g45740.1 68418.m05623 hypothetical protein 
          Length = 98

 Score = 90.6 bits (215), Expect = 8e-19
 Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 4/94 (4%)

Query: 43  WKSDVPLTEGQLRSKRDEFWDTAPAFDGRKEIWDXXXXXXXXXXXMDFQLAQAILDGASV 102
           W    P+T  QL + R+EFWDT+P + G++EIW+            D +LAQ I+D A V
Sbjct: 6   WAHTEPITRAQLTNMREEFWDTSPHYGGQREIWEALRAAAEA----DLKLAQTIVDSAGV 61

Query: 103 SVPNGYLTECYDEWGTRYQVPIYCLSPPINMVKE 136
            V N  LT C+DE G RY++P Y LS P N+++E
Sbjct: 62  IVQNRDLTLCWDERGARYELPRYVLSEPTNLIRE 95


>At1g16960.1 68414.m02059 expressed protein
          Length = 114

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 43  WKSDVPLTEGQLRSKRDEFWDTAPAFDGRKEIWDXXXXXXXXXXXMDFQLAQAILDGASV 102
           WK   P++  +L   R+EFWDTAP + G+KEIWD            D  LAQ IL+ A V
Sbjct: 23  WKHPQPISRDELTQMREEFWDTAPHYGGKKEIWDALRAAAEED---DLSLAQTILESAGV 79

Query: 103 SVPNGYLTECYDEWGTRYQVPIYCLSPPINMV 134
            V N  LT CYDE G++Y++P Y L  P N++
Sbjct: 80  IVQNTDLTICYDEKGSKYELPKYVLRDPSNLI 111


>At5g34885.1 68418.m04110 expressed protein
          Length = 115

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 19  SGTVSRPNSGGLRKNQSLCHET-IRWKSDVPLT---EGQLRSKRDEFW 62
           +GT+S P    L K   +CH+T I++ +D P+    E +   K D+ W
Sbjct: 58  NGTMSDPCCNDLVKEGKVCHDTLIKYIADKPMLIAHETEYLKKSDDLW 105


>At4g33500.1 68417.m04758 protein phosphatase 2C-related /
           PP2C-related YHR077c (NMD2,IFS1) protein -Saccharomyces
           cerevisiae,PID:g555939
          Length = 724

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/52 (32%), Positives = 22/52 (42%)

Query: 117 GTRYQVPIYCLSPPINMVKEASGRDSPAEWSEPAEGGAEVTLRLRLSSSCRD 168
           G RY VP + LS  + +    S   S A  S P E  A     L  S+  +D
Sbjct: 30  GIRYSVPEFRLSSQLQLANSISPSKSSASSSSPPENSAPEKFDLVSSTQLKD 81


>At5g34887.1 68418.m04111 expressed protein
          Length = 115

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 19  SGTVSRPNSGGLRKNQSLCHET-IRWKSDVPLT---EGQLRSKRDEFW 62
           +GT+  P    L K   +CH+T I++ +D P+    E +   K D+ W
Sbjct: 58  NGTMPDPCCNDLVKEGKVCHDTLIKYIADKPMLIAHETEYLKKSDDLW 105


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.135    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,066,831
Number of Sequences: 28952
Number of extensions: 246029
Number of successful extensions: 471
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 6
length of query: 236
length of database: 12,070,560
effective HSP length: 79
effective length of query: 157
effective length of database: 9,783,352
effective search space: 1535986264
effective search space used: 1535986264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)