GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001321-TA|BGIBMGA001321-PA|undefined
         (236 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.07 |||ubiquitin family protein, human UBTD1 homolog|Sch...    49   7e-07
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    27   1.8  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    26   4.2  
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    25   7.3  
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    25   9.6  

>SPAPB2B4.07 |||ubiquitin family protein, human UBTD1
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 49  LTEGQLRSKRDEFWDTAPAFDGRKEIWDXXXXXXXXXXXMDFQLAQAILDGASVSVPNGY 108
           LT+ ++  +R+EFW+T  A+ G KEIWD            + + A  +   A +++P   
Sbjct: 39  LTKEEVEVRRNEFWETCWAYGGSKEIWDVLHKVVTLLYEGNAEAATEMALAADLTIPEND 98

Query: 109 LTE-CYDEWGTRYQVP 123
           +++  YD  GT Y++P
Sbjct: 99  ISKGVYDSKGTFYEIP 114


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 11  GSGHIEESSGTVSRPNSGGLRKNQSLCHETIRWKSDVPLTE 51
           G   +EESSG  +     GL       H  I ++ D P+ E
Sbjct: 73  GEWTVEESSGPGALKGEAGLVMKDEAAHHAISYEFDEPINE 113


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 12  SGHIEESSGTVSRPNSGGL-RKNQSLCHETIRWKSDVPLTEGQLRSKRDEF 61
           SG  + S+G V       L RK  +L H+T+  + +V +    +  + D F
Sbjct: 57  SGQSKSSNGRVDTDRKMDLLRKRSNLVHQTLLLEKEVRVRRNAINQRDDSF 107


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 152 GGAEVTLRLRLSSSCRDVELAVCSRHTVAHCKNKLHSL 189
           GG  +TL   L+  C++ E  +C    +AH KN ++ +
Sbjct: 331 GGCTITL---LTPECKEEEFKLCKESLLAH-KNSIYDV 364


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 51  EGQLRSKRDEFWDTAPAF 68
           +GQLR + D FW TA  F
Sbjct: 321 KGQLRLRTDPFWTTAHYF 338


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,104,087
Number of Sequences: 5004
Number of extensions: 42659
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 5
length of query: 236
length of database: 2,362,478
effective HSP length: 71
effective length of query: 165
effective length of database: 2,007,194
effective search space: 331187010
effective search space used: 331187010
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)