GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001321-TA|BGIBMGA001321-PA|undefined
         (236 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0596 - 30495138-30495202,30496196-30496315,30496863-304969...    94   8e-20
05_06_0164 + 26085766-26085799,26086908-26087030,26087406-260875...    88   5e-18
10_08_0199 + 15721585-15722109,15722135-15722740,15723084-157232...    29   3.3  
06_01_0963 + 7411944-7412396,7412677-7412736,7412828-7413010,741...    29   4.3  
11_01_0639 - 5128139-5128159,5128237-5128329,5128431-5128491,512...    28   5.7  
07_03_1472 - 26753070-26753177,26753254-26753531,26753691-267538...    28   5.7  

>01_06_0596 -
           30495138-30495202,30496196-30496315,30496863-30496985,
           30497184-30497214
          Length = 112

 Score = 94.3 bits (224), Expect = 8e-20
 Identities = 42/94 (44%), Positives = 57/94 (60%), Gaps = 4/94 (4%)

Query: 43  WKSDVPLTEGQLRSKRDEFWDTAPAFDGRKEIWDXXXXXXXXXXXMDFQLAQAILDGASV 102
           WK +  +T  QL+  RDEFWDTAP + G+KEIWD            +  LAQ I+D A +
Sbjct: 22  WKHNQAITTTQLKQMRDEFWDTAPHYGGQKEIWDALRAAAEA----ELSLAQTIVDSAGI 77

Query: 103 SVPNGYLTECYDEWGTRYQVPIYCLSPPINMVKE 136
            V N  +T CYDE G +Y++P Y LS P N+++E
Sbjct: 78  IVSNSDMTICYDERGAKYELPKYVLSEPTNLIRE 111


>05_06_0164 +
           26085766-26085799,26086908-26087030,26087406-26087525,
           26087632-26087696
          Length = 113

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 40/94 (42%), Positives = 55/94 (58%), Gaps = 4/94 (4%)

Query: 43  WKSDVPLTEGQLRSKRDEFWDTAPAFDGRKEIWDXXXXXXXXXXXMDFQLAQAILDGASV 102
           WK    +T  QL   R+EFWDTAP + G+KEIWD            +  LAQ I++ A +
Sbjct: 23  WKHTQAITPTQLSKMREEFWDTAPHYGGQKEIWDALRAAAEA----ELPLAQTIVNSAGI 78

Query: 103 SVPNGYLTECYDEWGTRYQVPIYCLSPPINMVKE 136
            V N  +T CYDE G +Y++P Y LS P N+++E
Sbjct: 79  VVSNSDMTLCYDERGAKYELPKYVLSEPTNLIRE 112


>10_08_0199 +
           15721585-15722109,15722135-15722740,15723084-15723273,
           15723907-15724175
          Length = 529

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 126 CLSPPINMVKEASGRDSPAEWSEPAEGGAEVTLR-LRLSSSCRD-VELA-VCSRHTV 179
           C+S PI   +  +  D+    S  +EG  +V +R LR SS  R+ VE++ VC R  V
Sbjct: 214 CISEPIRRSESMNRADALRSRSYNSEGDIQVAIRSLRASSLSREMVEVSTVCDRRDV 270


>06_01_0963 +
          7411944-7412396,7412677-7412736,7412828-7413010,
          7413259-7413339,7414219-7414541,7414961-7415084
          Length = 407

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/51 (31%), Positives = 23/51 (45%)

Query: 9  RSGSGHIEESSGTVSRPNSGGLRKNQSLCHETIRWKSDVPLTEGQLRSKRD 59
          RSG+G    ++ + S P SGG R    +  E   +    P+  G  R  RD
Sbjct: 6  RSGAGGTPPTTRSSSTPGSGGARAIGGVAAEVTDYSIATPIVTGTARWFRD 56


>11_01_0639 -
           5128139-5128159,5128237-5128329,5128431-5128491,
           5128579-5128689,5128770-5129021,5129105-5129440,
           5129486-5131140,5131316-5131555
          Length = 922

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/66 (25%), Positives = 25/66 (37%)

Query: 126 CLSPPINMVKEASGRDSPAEWSEPAEGGAEVTLRLRLSSSCRDVELAVCSRHTVAHCKNK 185
           C SP     K+  G +   ++  P EG +E + + +     R V       H V H   K
Sbjct: 54  CPSPSPKRRKKGDGEEGDKDYIPPKEGKSERSAKAKRRKGERSVNRKDEGFHVVTHVSPK 113

Query: 186 LHSLVP 191
              L P
Sbjct: 114 GEPLAP 119


>07_03_1472 -
           26753070-26753177,26753254-26753531,26753691-26753865,
           26754974-26755468
          Length = 351

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 115 EWGTRYQVPIYCL-SPPINMVKEASGRDSPAEWSEPAEGGAEVTLRLRLSSSCRDVELAV 173
           EW  +  +PI+CL  P + M+   S R     W   A+G    T+ L +  +C  +E   
Sbjct: 131 EWEYQVMIPIFCLIGPRLVMLLNCSVRLLKFGWKMEADGIRPFTMPL-MKLACTALERVP 189

Query: 174 CSRHTV 179
            +R  +
Sbjct: 190 LTRKKI 195


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.135    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,962,816
Number of Sequences: 37544
Number of extensions: 340225
Number of successful extensions: 621
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 6
length of query: 236
length of database: 14,793,348
effective HSP length: 80
effective length of query: 156
effective length of database: 11,789,828
effective search space: 1839213168
effective search space used: 1839213168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)