GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001321-TA|BGIBMGA001321-PA|undefined
         (236 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92830-9|CAB07353.1|  537|Caenorhabditis elegans Hypothetical pr...    31   0.95 
Z49968-10|CAB54270.3|  490|Caenorhabditis elegans Hypothetical p...    29   2.2  
Z49968-9|CAB54271.3|  492|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z49968-6|CAB54272.2|  474|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AL110480-2|CAB60326.1|  244|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z92830-9|CAB07353.1|  537|Caenorhabditis elegans Hypothetical
           protein F11A5.9 protein.
          Length = 537

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 111 ECYDEWGTRYQVPIYCLSPPINMVKEASGRDSPAEWSEPAEGGAEV 156
           + +DEW   + V    L    N+V +  G+  PAEWS+P  G + V
Sbjct: 467 DTWDEWWWVWMVHFVTLFV-FNIVFQIYGKGVPAEWSKPGFGRSNV 511


>Z49968-10|CAB54270.3|  490|Caenorhabditis elegans Hypothetical
           protein M110.5a protein.
          Length = 490

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/60 (33%), Positives = 25/60 (41%)

Query: 120 YQVPIYCLSPPINMVKEASGRDSPAEWSEPAEGGAEVTLRLRLSSSCRDVELAVCSRHTV 179
           +QV        I  VK+   +D  AE S   EGG  V   L L S  + +E  V    TV
Sbjct: 168 FQVVFEMKKKQIEQVKQQQIQDGGAEISSKKEGGVAVADLLDLESELQQIERGVQQLSTV 227


>Z49968-9|CAB54271.3|  492|Caenorhabditis elegans Hypothetical
           protein M110.5b protein.
          Length = 492

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/60 (33%), Positives = 25/60 (41%)

Query: 120 YQVPIYCLSPPINMVKEASGRDSPAEWSEPAEGGAEVTLRLRLSSSCRDVELAVCSRHTV 179
           +QV        I  VK+   +D  AE S   EGG  V   L L S  + +E  V    TV
Sbjct: 168 FQVVFEMKKKQIEQVKQQQIQDGGAEISSKKEGGVAVADLLDLESELQQIERGVQQLSTV 227


>Z49968-6|CAB54272.2|  474|Caenorhabditis elegans Hypothetical
           protein M110.5c protein.
          Length = 474

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/60 (33%), Positives = 25/60 (41%)

Query: 120 YQVPIYCLSPPINMVKEASGRDSPAEWSEPAEGGAEVTLRLRLSSSCRDVELAVCSRHTV 179
           +QV        I  VK+   +D  AE S   EGG  V   L L S  + +E  V    TV
Sbjct: 152 FQVVFEMKKKQIEQVKQQQIQDGGAEISSKKEGGVAVADLLDLESELQQIERGVQQLSTV 211


>AL110480-2|CAB60326.1|  244|Caenorhabditis elegans Hypothetical
           protein Y24F12A.3 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 3   GCIGITRSGSGHIE---ESSG--TVSRPNSGGLRKNQ 34
           G IGI R GSG IE   + SG   V R  SGG+  N+
Sbjct: 170 GWIGIDRDGSGWIEVDRDGSGWIEVDRDGSGGIGMNR 206


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.135    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,161,864
Number of Sequences: 27539
Number of extensions: 248254
Number of successful extensions: 408
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 5
length of query: 236
length of database: 12,573,161
effective HSP length: 79
effective length of query: 157
effective length of database: 10,397,580
effective search space: 1632420060
effective search space used: 1632420060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)