Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001320-TA|BGIBMGA001320-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR001314|Peptidase S1A, chymotrypsin,
IPR009003|Peptidase, trypsin-like serine and cysteine
         (271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    27   3.8  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    26   5.0  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    26   6.6  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    25   8.7  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   8.7  
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce...    25   8.7  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   8.7  

>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 104 YPGYVEEPKSGDLAVIRLATALGISNTVNVLFLPPQNTFIPDGTSLTTVSWGFEYVGGPQ 163
           Y  Y+    S +   +R+   L +   ++ +++  ++ F+ D    TT +W F     P 
Sbjct: 164 YTDYLYTSNSKEAKTVRIRFQLFLVEFISKVYV--EDAFLGDSFMETTKAWIFTMTTSPW 221

Query: 164 LETLKTITQRKINIERC 180
           +    T T    +I RC
Sbjct: 222 MLVRHTATTICCDIMRC 238


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 132 NVLFLPPQNTFIPDGTSLTTVSWGFEYVG---GPQLETLKTITQRKINIE 178
           N  F+P    F PDG S  +     +Y+    GP+  T K + Q  + ++
Sbjct: 263 NTKFMPNDELFEPDGISRFSTQQARDYIQRTLGPRYLTGKVVEQEYLTVK 312


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 181 KAIYSGSTKVDISDRVICANEVGRSTCF 208
           K+IYS  T V++SD+VI A+ +  +  F
Sbjct: 97  KSIYSDLTDVELSDKVIKASYIEDTISF 124


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 27  GEHTTIEQFPYIVALVYYYPRPAIRVQR 54
           G  T I+  P +  ++Y Y RP I  +R
Sbjct: 329 GTTTVIDDLPKVREILYNYQRPGINPER 356


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 234 DDHPDVFTRIDTYTN 248
           +DHPDVF ++  Y N
Sbjct: 338 EDHPDVFEKLKEYVN 352


>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 16  VSAAPNTRLVGGEHTTIE----QFPYIVALVYYYPRPAIRVQRCVGSLISSWHVVT 67
           V+A P  R++      +E    +F Y+V     Y   A ++ R  G   S W   T
Sbjct: 149 VNAKPRYRIMSAYEQRVEAPDRKFQYLVVAAEPYESIAFKIDRAPGKFWSYWDAPT 204


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 119 IRLATALGISNTVN-VLFLPPQNTFIPDGTSLTTVSWGFEYVGGPQ 163
           +R  TAL  + ++  VLF    +TF+ D T L T SW    + GPQ
Sbjct: 464 LRKITALSAALSLGTVLFC--LHTFLCDSTVLMTWSWDGYPIKGPQ 507


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,187,763
Number of Sequences: 5004
Number of extensions: 47167
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 7
length of query: 271
length of database: 2,362,478
effective HSP length: 72
effective length of query: 199
effective length of database: 2,002,190
effective search space: 398435810
effective search space used: 398435810
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)