Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001320-TA|BGIBMGA001320-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR001314|Peptidase S1A, chymotrypsin,
IPR009003|Peptidase, trypsin-like serine and cysteine
         (271 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74180.1 68414.m08591 leucine-rich repeat family protein cont...    30   1.9  
At1g70690.1 68414.m08149 kinase-related contains Pfam PF01657:Do...    28   5.8  

>At1g74180.1 68414.m08591 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 951

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 128 SNTVNVLFLPPQNTFIPDGTSLTTVSWGFEYVGGP-QLETLKTITQRKINIERCKAIYSG 186
           SN+ N    P    F+   TSLTT+     Y+GGP  ++ LK +T+ ++ ++  ++ Y+G
Sbjct: 147 SNSFNNSIFP----FLNAATSLTTLFIQSNYIGGPLPIKELKNLTKLEL-LDLSRSGYNG 201

Query: 187 S 187
           S
Sbjct: 202 S 202


>At1g70690.1 68414.m08149 kinase-related contains Pfam
           PF01657:Domain of unknown function; similar to
           receptor-like protein kinase 4 GI:13506745 [Arabidopsis
           thaliana]
          Length = 299

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 175 INIERCKAIYSGSTKVDISDRVICANEVGRSTCFGD----SGAPMVIGQVLVGTASYHEG 230
           + +E C   Y   + + + D+ +  N+ G+   F D    + A  VIG +  G  SY  G
Sbjct: 121 LQMENCLIRYDNKSFLGVQDKTLILNKCGQPMEFNDQDALTKASDVIGSLGTGDGSYRTG 180


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,416,401
Number of Sequences: 28952
Number of extensions: 265553
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 3
length of query: 271
length of database: 12,070,560
effective HSP length: 80
effective length of query: 191
effective length of database: 9,754,400
effective search space: 1863090400
effective search space used: 1863090400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)