GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001320-TA|BGIBMGA001320-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR001314|Peptidase S1A, chymotrypsin,
IPR009003|Peptidase, trypsin-like serine and cysteine
         (271 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676     31   1.3  
07_01_0232 + 1701612-1701753,1701848-1703280                           28   7.0  
07_01_0228 + 1669033-1669171,1669268-1669655,1669807-1670569           28   7.0  
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559...    28   7.0  
01_06_0356 + 28662956-28664043,28664255-28665139,28665227-286658...    28   7.0  
09_04_0655 - 19254911-19254983,19255078-19255441,19255816-192559...    28   9.2  
03_02_0050 + 5272471-5274861                                           28   9.2  

>05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676
          Length = 365

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 13/160 (8%)

Query: 82  IRAGSTNALSGGTVVRVGQVTKYPGYV-EEPKSGDLAVIRLATALGISNTVNVLFLPPQN 140
           +RA  +N      +V VGQV   P  + ++  +G   V R+ +A+ I N   V  +   N
Sbjct: 206 LRAMYSNGARKVALVGVGQVGCSPNELAQQSANGVTCVERINSAIRIFNQKLVGLVDQFN 265

Query: 141 TFIPDGTSLTTVS-WGF--EYVGGPQLETLKTITQRKINIERCKAIYSGSTKVDISDRVI 197
           T +P G   T ++ +G   + +G P    LK   Q    + R     +      +  +  
Sbjct: 266 T-LP-GAHFTYINIYGIFDDILGAPGSHGLKVTNQGCCGVGR-----NNGQVTCLPFQTP 318

Query: 198 CANEVGRSTCFGDSGAPMVIGQVLVGTASYHEGCGDDDHP 237
           CAN       F D+  P     VLVG  +Y      D HP
Sbjct: 319 CANR--HEYAFWDAFHPTEAANVLVGQRTYSARLQSDVHP 356


>07_01_0232 + 1701612-1701753,1701848-1703280
          Length = 524

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 196 VICANEVGRSTCFGDSGAPMVIGQVLVGTASYHEGCGDD 234
           ++  +  GR T F   GA MVI Q+L+G A      GDD
Sbjct: 347 MLAVDRFGRRTLFLAGGAQMVISQLLIG-AIMAAQLGDD 384


>07_01_0228 + 1669033-1669171,1669268-1669655,1669807-1670569
          Length = 429

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 196 VICANEVGRSTCFGDSGAPMVIGQVLVGTASYHEGCGDD 234
           ++  +  GR T F   GA MVI Q+L+G A      GDD
Sbjct: 253 MLAVDRFGRRTLFLAGGAQMVISQLLIG-AIMAAQLGDD 290


>04_03_0129 -
           11554917-11555033,11555470-11555613,11555807-11555999,
           11556083-11556139,11556300-11556403,11556882-11556953,
           11557069-11557187,11557639-11557783,11558527-11558672,
           11558758-11558827,11559000-11559056,11559081-11559228,
           11559311-11559432,11559649-11559845,11560296-11560350,
           11560468-11560680,11561239-11561386,11561515-11561585,
           11563286-11563316,11563532-11563623,11565621-11565688,
           11567895-11568069
          Length = 847

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 70  YCFTGAILDNMEIRAGSTNALSGGTVVRVGQVTKYP 105
           Y F   ILD++E   GSTN+  G   V +G    +P
Sbjct: 527 YEFLQDILDSLEFARGSTNSTWGSLRVAMGHPEPFP 562


>01_06_0356 +
           28662956-28664043,28664255-28665139,28665227-28665840,
           28665929-28666338
          Length = 998

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 10  LAFVAAVSAAPNTRLVGGEHTTIEQFPYIVALVYYYPRPAIRVQRCVGSLISSWHVVTSG 69
           L+F++++  + NT L+G   T +++ P +  LV  Y   +  +   +G+L     +  + 
Sbjct: 93  LSFLSSLVLS-NTTLIGPVPTELDRLPRLQTLVLSYNSLSGTIPSILGNLTRLESLYLNS 151

Query: 70  YCFTGAI------LDNMEIRAGSTNALSG 92
             F G I      L+N++I   S N LSG
Sbjct: 152 NKFFGGIPQELANLNNLQILRLSDNDLSG 180


>09_04_0655 -
           19254911-19254983,19255078-19255441,19255816-19255901,
           19256737-19257410
          Length = 398

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 107 YVEEPKSGDLAVIRLA-TALGISNTVNVLFLPPQNTFIPDGTSLTTVSWGFEYVGGP 162
           +VE P   + +V+ ++ T +G+S     LF+  Q+  I  G  LT +     +V GP
Sbjct: 227 HVETPSIIEGSVLIMSKTGVGLSMFSMGLFMALQDKIIVCGAGLTVLGMALRFVAGP 283


>03_02_0050 + 5272471-5274861
          Length = 796

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 133 VLFLPPQNTFIPDGTSLTTVSWGF--EYVGGPQLETLKTITQRKI 175
           +L  PPQ  F+PD  S  TV   +  EY   P L     + +RK+
Sbjct: 476 LLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKL 520


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,378,299
Number of Sequences: 37544
Number of extensions: 356046
Number of successful extensions: 659
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 658
Number of HSP's gapped (non-prelim): 7
length of query: 271
length of database: 14,793,348
effective HSP length: 81
effective length of query: 190
effective length of database: 11,752,284
effective search space: 2232933960
effective search space used: 2232933960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)