GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001320-TA|BGIBMGA001320-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR001314|Peptidase S1A, chymotrypsin,
IPR009003|Peptidase, trypsin-like serine and cysteine
         (271 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    63   3e-12
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    24   1.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 62.9 bits (146), Expect = 3e-12
 Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 29/247 (11%)

Query: 22  TRLVGGEHTTIEQFPYIVALVYYYPRPAIRVQRCVGSLISSWHVVTSGYCFTGAILDNME 81
           +R+VGG +T I +FP +  +   Y    I    C  ++IS  +V+T+ +C        + 
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGMI----CGATIISKRYVLTAAHCIIDENTTKLA 214

Query: 82  IRAG----STNALSGGTVVR-VGQVTKYPGY--VEEP--KSGDLAVIRLATALGISNTVN 132
           I  G    S+   +  TV+  + +V  +P Y  +E+   +  D+A+++    +   + V 
Sbjct: 215 IVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVG 274

Query: 133 VLFLPPQNTFIPD--GTSLTTVSWGFEYVGGPQLETLKTITQRKINIERCKAIYSGSTKV 190
              LP Q+ F+    G+ +T + WG     G     L+  T   +    C   Y      
Sbjct: 275 PACLPFQH-FLDSFAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYYG----- 328

Query: 191 DISDRVICANEVGRSTCFGDSGAPMVIGQ------VLVGTASYHEGCGDDDHPDVFTRID 244
           +I    +CA   G+  C  DSG P++         V +G  S+   CG   +P+  T++ 
Sbjct: 329 NIMVNAMCAYAKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECG--KYPNGNTKVG 386

Query: 245 TYTNWIM 251
           +Y +WI+
Sbjct: 387 SYIDWIV 393


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 223 GTASYHEGCGDDDHPDVFTRIDTYTNWIMQVATAP 257
           GT SY  GCGD  H   +    +    I+Q A  P
Sbjct: 31  GTTSYCLGCGDSCHKCKYGIAMSSACGIVQCAKGP 65


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 176 NIERCKAIYSGSTKVDISDRVICANEVGRSTC---FGDSGAPMVI---GQVLVGTASYH 228
           ++E+CKA+   +   D+  +  C  E  +  C     ++ A + +   G VL  T  Y+
Sbjct: 395 DLEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIKENNADLTVVSGGSVLRATKEYN 453


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 176 NIERCKAIYSGSTKVDISDRVICANEVGRSTC---FGDSGAPMVI---GQVLVGTASYH 228
           ++E+CKA+   +   D+  +  C  E  +  C     ++ A + +   G VL  T  Y+
Sbjct: 395 DLEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIKENNADLTVVSGGSVLRATKEYN 453


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 176 NIERCKAIYSGSTKVDISDRVICANEVGRSTC---FGDSGAPMVI---GQVLVGTASYH 228
           ++E+CKA+   +   D+  +  C  E  +  C     ++ A + +   G VL  T  Y+
Sbjct: 395 DLEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIKENNADLTVVSGGSVLRATKEYN 453


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,843
Number of Sequences: 429
Number of extensions: 3259
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 271
length of database: 140,377
effective HSP length: 57
effective length of query: 214
effective length of database: 115,924
effective search space: 24807736
effective search space used: 24807736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)