Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001319-TA|BGIBMGA001319-PA|IPR002048|Calcium-binding
EF-hand
         (74 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              29   0.005
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   0.69 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   2.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   4.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 29.5 bits (63), Expect = 0.005
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 2   ARKMKDTDSEEE--IREAFRVFDKDGNGFISAAELRHVMTN--LGEKLTDEEVDEMIREA 57
           AR M   +  +E  +   F  +D++ NG +   EL     N  L E      +  MI   
Sbjct: 224 ARLMSQDNHSKEYLVSIMFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYD 283

Query: 58  DIDGDGQVN 66
           D DGDG++N
Sbjct: 284 DTDGDGKLN 292


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 0.69
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 45  LTDEEVDEMIREADIDGDGQVNYEG 69
           LT+E++ +    A ++ D +V Y G
Sbjct: 78  LTEEKLPKTSSNASVEPDSKVTYSG 102


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 2.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 41  LGEKLTDEEVDEMIREADIDG 61
           +GE +T+EE ++  +E D  G
Sbjct: 526 VGEVITNEEAEKRGKEYDAAG 546


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.4 bits (38), Expect = 4.9
 Identities = 5/13 (38%), Positives = 11/13 (84%)

Query: 33  ELRHVMTNLGEKL 45
           +L+H+  N+G+K+
Sbjct: 174 DLKHINQNMGDKV 186


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.131    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,271
Number of Sequences: 429
Number of extensions: 536
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 74
length of database: 140,377
effective HSP length: 46
effective length of query: 28
effective length of database: 120,643
effective search space:  3378004
effective search space used:  3378004
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.0 bits)
S2: 36 (18.6 bits)