GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001319-TA|BGIBMGA001319-PA|IPR002048|Calcium-binding
EF-hand
         (74 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    20   2.4  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    20   2.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   3.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   3.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          19   7.3  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    18   9.7  

>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 2   ARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK-LTDEEVDEM 53
           A+  +    +E IRE    F  +G+   +AA    +M   G K + D+ V+EM
Sbjct: 290 AKNKEGLIDDEGIREEVDTFMFEGHDTTAAALGFALMVLAGHKEVQDKIVEEM 342


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 2   ARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK-LTDEEVDEM 53
           A+  +    +E IRE    F  +G+   +AA    +M   G K + D+ V+EM
Sbjct: 290 AKNKEGLIDDEGIREEVDTFMFEGHDTTAAALGFALMVLAGHKEVQDKIVEEM 342


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
          protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 8  TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 44
          T   E++RE + VFD         +E++      G K
Sbjct: 22 TQMPEKVREKWNVFDDPPREPTVGSEVKRTYIEWGVK 58


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
          CHS2 protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 8  TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 44
          T   E++RE + VFD         +E++      G K
Sbjct: 22 TQMPEKVREKWNVFDDPPREPTVGSEVKRTYIEWGVK 58


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query: 7  DTDSEEEIREAFR 19
          D+D++EE R +F+
Sbjct: 40 DSDNDEEERPSFK 52


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 47  DEEVDEMIREADIDGDGQVNYE 68
           D E DE  +  D D  G++  E
Sbjct: 169 DREKDEEDKRDDTDMHGRIKSE 190


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.131    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,578
Number of Sequences: 317
Number of extensions: 499
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 74
length of database: 114,650
effective HSP length: 45
effective length of query: 29
effective length of database: 100,385
effective search space:  2911165
effective search space used:  2911165
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.6 bits)
S2: 35 (18.2 bits)