Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001319-TA|BGIBMGA001319-PA|IPR002048|Calcium-binding
EF-hand
(74 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 114 2e-27
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 72 1e-14
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 65 1e-12
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 63 5e-12
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 48 2e-07
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 42 1e-05
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 38 1e-04
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 31 0.018
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 30 0.043
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 29 0.075
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 28 0.13
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 28 0.17
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 27 0.30
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 0.40
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 27 0.40
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 26 0.53
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 24 2.1
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 24 2.1
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 24 2.8
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 24 2.8
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 23 3.7
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 23 4.9
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 23 6.5
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 23 6.5
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc... 23 6.5
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 23 6.5
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 22 8.6
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 114 bits (274), Expect = 2e-27
Identities = 50/68 (73%), Positives = 61/68 (89%)
Query: 1 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 60
MARKMKDTD+EEE+REAF+VFDKDGNG+I+ EL HV+T+LGE+L+ EEV +MIREAD D
Sbjct: 74 MARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTD 133
Query: 61 GDGQVNYE 68
GDG +NYE
Sbjct: 134 GDGVINYE 141
Score = 55.6 bits (128), Expect = 8e-10
Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 8 TDSE-EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 66
TD + E REAF +FD+D +G I++ EL VM +LG+ T E+ +MI E D DG+G ++
Sbjct: 7 TDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTID 66
Query: 67 Y 67
+
Sbjct: 67 F 67
Score = 35.9 bits (79), Expect = 6e-04
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 3 RKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA----D 58
R + + + E+++ D DGNG I E +T + K+ D + +E +REA D
Sbjct: 39 RSLGQSPTAAELQDMINEVDADGNGTIDFTEF---LTMMARKMKDTDNEEEVREAFKVFD 95
Query: 59 IDGDGQVNYE 68
DG+G + E
Sbjct: 96 KDGNGYITVE 105
Score = 26.6 bits (56), Expect = 0.40
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 10 SEEEIREAFRVFDKDGNGFISAAELRHVMTN 40
S+EE+ + R D DG+G I+ E V+++
Sbjct: 119 SQEEVADMIREADTDGDGVINYEEFSRVISS 149
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 71.7 bits (168), Expect = 1e-14
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 1 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 60
++ K+++T+SEEE +AFRVFDKD +G+I A+ M LGEKL+D EV M++EAD
Sbjct: 67 VSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPT 126
Query: 61 GDGQVNY 67
G +Y
Sbjct: 127 NSGSFDY 133
Score = 35.1 bits (77), Expect = 0.001
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 9 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 56
+ +E++EAF ++D D +G I + + V+ +LG +TD E+ ++ E
Sbjct: 6 EQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNE 53
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 64.9 bits (151), Expect = 1e-12
Identities = 29/56 (51%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 12 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 67
EE + F+VFDKD G I ELR+V+T+LGEKL++EE+DE+++ + DG VNY
Sbjct: 77 EEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNY 131
Score = 25.8 bits (54), Expect = 0.70
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 15 REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 53
++AF +FD+ G G I + ++ G+ T E+ E+
Sbjct: 9 KQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEI 47
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 62.9 bits (146), Expect = 5e-12
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 1 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 60
M K+ + D EEI+ AF +FD D G IS LR V L E + D+E++ MI E D+D
Sbjct: 99 MTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIEEFDLD 158
Query: 61 GDGQVN 66
DG++N
Sbjct: 159 QDGEIN 164
Score = 41.1 bits (92), Expect = 2e-05
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 9 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 68
+ ++I EAF++FD D + I ELR M LG EV +++R+ D G G + E
Sbjct: 34 EQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQME 93
Score = 29.1 bits (62), Expect = 0.075
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 11 EEEIREAFRVFDKDGNGFISAAELRHVMT-NLGEKLTDEEVDEMIREADIDGDGQVN 66
+ E+ + R FDK G G++ + VMT + E+ EE+ D D G+++
Sbjct: 72 KSEVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKIS 128
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 47.6 bits (108), Expect = 2e-07
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 9 DSEEEIREAFRVFDKDGNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADIDGDG 63
+ EE+++ AF+++D D +G+IS EL V+ TNL E + VD+ I E D D DG
Sbjct: 90 NKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQIVDKTIMEVDKDRDG 149
Query: 64 QVNYE 68
++++E
Sbjct: 150 KISFE 154
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 41.9 bits (94), Expect = 1e-05
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 1 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 60
M+ K + +EE EAF +FD G+I +LR LGE LT E++ M+ A +
Sbjct: 1 MSVSTKRLEMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDLAGTN 60
Query: 61 G 61
G
Sbjct: 61 G 61
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 38.3 bits (85), Expect = 1e-04
Identities = 13/42 (30%), Positives = 30/42 (71%)
Query: 12 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 53
+E++EAF + DKDG+G I +++ ++T+L + +++ ++ M
Sbjct: 48 QELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHM 89
Score = 33.5 bits (73), Expect = 0.003
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 13 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 55
++ EAF FD +G I + +R ++++G+++ +EV+ ++R
Sbjct: 118 DLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVESILR 160
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 31.1 bits (67), Expect = 0.018
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 1 MARKMKDTDSEE--EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 58
+ +K + +EE + + F D DG G++ + +K + +EV E IRE +
Sbjct: 6 LQKKYPELTNEEILTLTDQFNKLDVDGKGYLDQPTTIKAFED-SKKGSYDEVREAIREVN 64
Query: 59 IDGDGQVNYE 68
+D G+V E
Sbjct: 65 VDSSGRVEPE 74
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 29.9 bits (64), Expect = 0.043
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 7 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 66
D + + E FR + + NG++S ++ V+ + KL+ ++++++ ADID DG +
Sbjct: 2 DPQEKNKYWEIFRGLNPE-NGYLSGSKAAGVLRS--SKLSSDKLEKIWDLADIDDDGMFD 58
Query: 67 YE 68
++
Sbjct: 59 FD 60
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 29.1 bits (62), Expect = 0.075
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 11 EEEIREAFRVFDKDGNGFISA-AELRHVMTNLGEKLTDEEVDEMI 54
EE +++ R DK GN F +A EL V+ +G+K E + E I
Sbjct: 662 EEILQDCCRHIDKSGNEFTTAYLELLEVLLKVGQKYLAESLLEHI 706
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 28.3 bits (60), Expect = 0.13
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 2 ARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD-EMIREADID 60
A M ++DSE EI + D N LR+ + +L +K +E D E + +D D
Sbjct: 196 ADNMNESDSESEIESSDSDHDDGENSDSKLDNLRNYIVSLNQKRKKDEADAESVLSSD-D 254
Query: 61 GD 62
D
Sbjct: 255 ND 256
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 27.9 bits (59), Expect = 0.17
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 18 FRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 68
F VFD D NG+I E ++ ++++ + D+D +G ++Y+
Sbjct: 69 FNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYD 119
Score = 24.2 bits (50), Expect = 2.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 17 AFRVFDKDGNGFISAAELRHVM 38
AF+++D D NG IS E+ ++
Sbjct: 104 AFQLYDLDNNGLISYDEMLRIV 125
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 27.1 bits (57), Expect = 0.30
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 2 ARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 60
AR++K I + ++ D+ + +A EL V LG+ +TD VDE +A+++
Sbjct: 113 ARQLKSQSKNVSIEKIEKLQDEIQDYMDAAGELNEV---LGQNMTDINVDEEELDAELE 168
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 0.40
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 21 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDEMIREAD 58
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAE 521
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 0.40
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 21 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDEMIREAD 58
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAE 521
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 0.53
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 37 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGE 70
V + E+ +EE DEM E D +G+G E E
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEE 203
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.2 bits (50), Expect = 2.1
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 3 RKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT-----NLGEKLTDEEVDEMIREA 57
R + +S +R+ FR ++ G+ AE +++ + +KL +EV E + +
Sbjct: 1078 RIFEQKNSFATLRDLFRWAFREAVGYQQLAENGYMLLAERARDQKDKLAVQEVIEKVMKV 1137
Query: 58 DIDGDGQVNYE 68
ID DG N +
Sbjct: 1138 KIDTDGIYNLD 1148
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 24.2 bits (50), Expect = 2.1
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 1 MARKMKDTDSEEE---IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 57
+ + K T S++E I + FR F+K + ++ E + +LG EE + A
Sbjct: 473 LLEREKRTLSKQELDGITKVFRHFEKKKSNMLNEVEFYAALASLGLVYDTEEGTALFHRA 532
Query: 58 DIDGDGQVNYE 68
+G V YE
Sbjct: 533 ANSEEG-VTYE 542
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 23.8 bits (49), Expect = 2.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 31 AAELRHVMTNLGEKLTDEEVDEMIREADI 59
AAEL T E DEE+D + E DI
Sbjct: 224 AAELNDEQTREIEMYADEELDNIFVEDDI 252
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 23.8 bits (49), Expect = 2.8
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 30 SAAELRHVMTNL-------GEKLTDEEVDEMIREADIDGDGQVNYEG 69
+AA L H+ N GE + D E D+ I E+D + + +Y G
Sbjct: 172 TAARLEHMRLNALKAANDEGEDVKDNEQDDNIDESDPFANPKASYRG 218
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 23.4 bits (48), Expect = 3.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 10 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD 51
S E + E F+ D D +G +S E +H ++ L K E VD
Sbjct: 331 SMEFLEETFQKADADHSGKLSFEEFQHFVSLL--KTRSEIVD 370
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 23.0 bits (47), Expect = 4.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 38 MTNLGEKLTDEEVDEMIREADIDGDGQVNYEGE 70
MT ++L D+++DE+I +DG Q + E
Sbjct: 1 MTVQIDELDDKDLDEIIANGTLDGAKQGAVDSE 33
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 22.6 bits (46), Expect = 6.5
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 2 ARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEV 50
A K + + + + + KD GF+ AEL + G+ DE +
Sbjct: 258 ALKQRVRKNNRQFQSDIDRYRKDPEGFMKPAELNEIPKPAGKAGQDEVI 306
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 22.6 bits (46), Expect = 6.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 21 FDKDGNGFISAAELRH-VMTNLGEKLTDEEVDEMI 54
F K+ + AA L V + EKL DEE +EMI
Sbjct: 666 FQKEASPNKGAAALSSKVEPEVVEKLLDEEEEEMI 700
>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 22.6 bits (46), Expect = 6.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 12 EEIREAFRVFDKDG 25
EE+R+ VFDK+G
Sbjct: 202 EELRQGIDVFDKEG 215
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 22.6 bits (46), Expect = 6.5
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 8 TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK--LTD---EEVDEMIREADID 60
+DS+EE +A + D G S EL MT L + LT ++++E+ +A +D
Sbjct: 555 SDSDEEEEKATARKESDEKGSSSQKELVDRMTELASQSILTPNDLKKLEELREQAGVD 612
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 22.2 bits (45), Expect = 8.6
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 22 DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 54
+K GF S L + N+ EKL +EEV + I
Sbjct: 600 EKIRTGF-SGRYLTSGLVNMAEKLANEEVHDNI 631
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.131 0.348
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 323,318
Number of Sequences: 5004
Number of extensions: 11347
Number of successful extensions: 52
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 37
length of query: 74
length of database: 2,362,478
effective HSP length: 54
effective length of query: 20
effective length of database: 2,092,262
effective search space: 41845240
effective search space used: 41845240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 45 (22.2 bits)
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