GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001319-TA|BGIBMGA001319-PA|IPR002048|Calcium-binding
EF-hand
         (74 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    48   4e-08
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   0.83 
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        21   3.4  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 47.6 bits (108), Expect = 4e-08
 Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 3   RKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DID 60
           +K K+    E+  E  +++DK+ +G +  AEL H +T LGE+L D E+D ++++     D
Sbjct: 76  KKEKEQGCFEDFLECLKLYDKNEDGTMLLAELTHSLTALGERLDDVELDNVMKDCMDPED 135

Query: 61  GDGQVNY 67
            DG + Y
Sbjct: 136 DDGNIPY 142



 Score = 27.5 bits (58), Expect = 0.051
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 1  MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 53
          MA  +KD + E+  +  F V+D +G+G + A +L + +  L    T E + +M
Sbjct: 1  MANDLKDVEIEKA-QFVFSVYDWEGSGQMDAMDLGNALRALNLNPTIELIGKM 52


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 0.83
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 22   DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 64
            D++GN      E     T +G +++  +VD  +RE +    GQ
Sbjct: 1061 DQEGNDMEREVETSDEFTGIGIRVSFTQVDAEMREMNQLSGGQ 1103


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 3   RKMKDTDSEEEIREAFRVFDKDGNGFISAAE 33
           R+ ++ D+  E+R A    DK+   F+  A+
Sbjct: 478 RERREADTAAELRYAKEHADKENRHFLQYAQ 508


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.310    0.131    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,530
Number of Sequences: 2123
Number of extensions: 2734
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 74
length of database: 516,269
effective HSP length: 51
effective length of query: 23
effective length of database: 407,996
effective search space:  9383908
effective search space used:  9383908
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.8 bits)
S2: 40 (20.2 bits)