GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001318-TA|BGIBMGA001318-PA|IPR002048|Calcium-binding
EF-hand
         (72 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   2.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   7.9  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)

Query: 5   AADQLTEEQIAEFKEAFS---LFDKD 27
           AADQ  E+ + E+K+      LF KD
Sbjct: 427 AADQKLEKHLIEYKKMLKIKRLFGKD 452


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 24  FDKDGDG 30
           FDK+GDG
Sbjct: 530 FDKNGDG 536


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,313
Number of Sequences: 429
Number of extensions: 455
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 72
length of database: 140,377
effective HSP length: 46
effective length of query: 26
effective length of database: 120,643
effective search space:  3136718
effective search space used:  3136718
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.2 bits)
S2: 36 (18.6 bits)