Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001317-TA|BGIBMGA001317-PA|undefined
(285 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 33 0.29
At4g27910.1 68417.m04006 PHD finger protein-related / SET domain... 32 0.51
At2g25350.1 68415.m03032 phox (PX) domain-containing protein wea... 32 0.51
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-... 31 1.2
At1g80940.1 68414.m09497 expressed protein 30 1.5
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 30 2.0
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ... 29 2.7
At5g05610.2 68418.m00611 PHD finger family protein contains Pfam... 29 2.7
At5g05610.1 68418.m00610 PHD finger family protein contains Pfam... 29 2.7
At2g06775.1 68415.m00756 hypothetical protein 29 3.6
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ... 29 4.7
At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp... 29 4.7
At4g27300.1 68417.m03917 S-locus protein kinase, putative simila... 29 4.7
At4g14980.1 68417.m02302 DC1 domain-containing protein contains ... 29 4.7
At1g77250.1 68414.m08997 PHD finger family protein contains Pfam... 29 4.7
At5g50840.2 68418.m06299 expressed protein 28 6.2
At5g50840.1 68418.m06298 expressed protein 28 6.2
At4g37910.1 68417.m05361 heat shock protein 70, mitochondrial, p... 28 6.2
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai... 28 6.2
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ... 28 6.2
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 28 6.2
At2g39300.1 68415.m04825 expressed protein ; expression supporte... 28 6.2
At1g65010.1 68414.m07368 expressed protein similar to endosome-a... 28 6.2
At5g54040.1 68418.m06721 DC1 domain-containing protein contains ... 28 8.2
At5g54020.1 68418.m06719 expressed protein 28 8.2
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 28 8.2
At3g05130.1 68416.m00557 expressed protein ; expression supporte... 28 8.2
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 28 8.2
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ... 28 8.2
At1g19980.1 68414.m02503 cytomatrix protein-related contains wea... 28 8.2
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 32.7 bits (71), Expect = 0.29
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 158 VTENRLRG---ILQQEISTALNTTIKKI--VVTEFKNVLDKIDGFRDSLEFMSTKYEEMK 212
++E R++ ++ Q L T +K+ +V+ + +D++D D T E++K
Sbjct: 1030 ISEERIKDEVPVIDQSAIIKLETENQKLKALVSSMEEKIDELDRKHDETSPNIT--EKLK 1087
Query: 213 SKFESETSTITELKCDNERLKTTIRDLTARLNAPLRRIIDE 253
+ ++ L+ +NERLK + L ++N DE
Sbjct: 1088 EDVSFDYEIVSNLEAENERLKALVGSLEKKINESGNNSTDE 1128
>At4g27910.1 68417.m04006 PHD finger protein-related / SET
domain-containing protein (TX4) nearly identical over
285 amino acids to trithorax 4 [Arabidopsis thaliana]
GI:16118405; contains Pfam profiles PF00856: SET domain,
PF00855: PWWP domain; identical to cDNA trithorax 4
(TX4) partial cds GI:16118404
Length = 1027
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 7 CSGCRNVLDNDPCLGCCRCKAKYDLVCANVASFDYELMDAKHKASWKCPECCSK 60
C RN LDN + C CK + C ++ D L D + + + CP C +K
Sbjct: 404 CKKIRNHLDNKSWVRCDGCKVRIHAECDQIS--DRHLKDLR-ETDYYCPTCRAK 454
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 7 CSGCRNVLDNDPCLGCCRCKAKYDLVCANVASFDYEL 43
C C+ + + C CC+C Y +CA+ A + EL
Sbjct: 706 CVICKQI--HGSCTQCCKCSTYYHAMCASRAGYRMEL 740
>At2g25350.1 68415.m03032 phox (PX) domain-containing protein weak
similarity to SP|Q9UTK5 Abnormal long morphology protein
1 (Sp8) {Schizosaccharomyces pombe}; contains Pfam
profile PF00787: PX domain
Length = 643
Score = 31.9 bits (69), Expect = 0.51
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 184 VTEFKNVLDKIDGFRDSLEFMSTKYEEMKSKFESETSTIT-ELKC----DNERLKTTIRD 238
++E +L ++D + LE +S +Y E+++K +++ + E+K E K R
Sbjct: 488 ISESHELLQEMDATKQQLEDLSRRYVELEAKSKADIKVLVREVKSLRRSHMEMEKELTRS 547
Query: 239 LTARLNAPL----RRIIDE--YHSLITVMPDLDVFHDKLRVFKDRIGKDE 282
LT + + RII E + + D ++ HD+L+V + DE
Sbjct: 548 LTEKSDTEKLLQQERIIVENTLEARRRLYSDCEILHDRLKVNNTNLSMDE 597
>At5g53430.1 68418.m06640 PHD finger family protein / SET
domain-containing protein (TX5) contains Pfam domain,
PF00628: PHD-finger and PF00856: SET domain; identical
to cDNA trithorax 5 (TX5) partial cds GI:16118406
Length = 1043
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 7 CSGCRNVLDNDPCLGCCRCKAKYDLVCANVASFDYEL 43
C C+ + + C CC+C Y +CA+ A + EL
Sbjct: 721 CVICKQI--HGSCTQCCKCSTYYHAMCASRAGYRMEL 755
>At1g80940.1 68414.m09497 expressed protein
Length = 213
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 178 TIKKIVVTEFKNVLDKIDGFRDSLEFMSTKYEEMKSKFESETSTITELKCDNERLKTTI 236
++++I V E +IDG + LE S E ++ + E S TE++ +N LK +
Sbjct: 137 SMRRIAVQEMNRKDREIDGLNEQLEEDSRCLEHLQLQLLQERSKRTEIERENTMLKEQV 195
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 186 EFKNVLDKIDGFRDSLEFMSTKYEEMKSKFESETSTITELKCDNERLK 233
+ K + ++ + + +S + EM K + STI EL ++ERLK
Sbjct: 588 QVKELNQNLNSSEEEKKILSQQISEMSIKIKRAESTIQELSSESERLK 635
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 168 QQEISTALNTTIKKIVVTEFK--NVLDKIDGFRDSLEFMSTKYEEMKSKFESETSTITEL 225
Q+E+ST L ++ +E + + + + + MSTK E + E + EL
Sbjct: 656 QRELSTQLRGLEAQLESSEHRVLELSESLKAAEEESRTMSTKISETSDELERTQIMVQEL 715
Query: 226 KCDNERLKTTIRDLTARL 243
D+ +LK + + ++L
Sbjct: 716 TADSSKLKEQLAEKESKL 733
>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 519
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 7 CSGCRNVLDNDPCLGCCRCKAKYDLVCANV 36
C C +D+DP C CK VCA++
Sbjct: 286 CDACIRPIDSDPFFKCVECKFFLHKVCASL 315
>At5g05610.2 68418.m00611 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 241
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 7 CSGCRNVLDNDPCLGCCR-CKAKYDLVCANVASFDYELMDAKHKASWKCPECCSKE 61
C C ND CC C+ Y C + E + +KCP CC+K+
Sbjct: 188 CGSCGGNYTNDEFWICCDVCERWYHGKCVKITPAKAESIK-----QYKCPSCCTKK 238
>At5g05610.1 68418.m00610 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 241
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 7 CSGCRNVLDNDPCLGCCR-CKAKYDLVCANVASFDYELMDAKHKASWKCPECCSKE 61
C C ND CC C+ Y C + E + +KCP CC+K+
Sbjct: 188 CGSCGGNYTNDEFWICCDVCERWYHGKCVKITPAKAESIK-----QYKCPSCCTKK 238
>At2g06775.1 68415.m00756 hypothetical protein
Length = 128
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 192 DKIDGFRDSLEFMSTKYEEMKSKFESETSTIT 223
D +DG ++ ++ + +K EMK+KFE + +T
Sbjct: 33 DFVDGHQEDVKRIGSKMSEMKAKFEEKFDDLT 64
>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 488
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 7 CSGCRNVLDNDPCLGCCRCKAKYDLVCANVASFDYELMDAKHK 49
C C ++ DPC C C CAN+ L+ KHK
Sbjct: 310 CQCCILAINGDPCYRCVECDFILHDACANLPRKKQHLLH-KHK 351
>At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 930
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 168 QQEISTALNTTIKKIVVTEFKNVLDKIDGFRDSLEFMSTKYEEMKSKFESETSTITELKC 227
Q++ + A TT+ +++ +F L K GF +E EE+KS+ + E S ++ +
Sbjct: 744 QEKKNEAAATTLNRLIAGDFLESLGKELGFEVPME------EEIKSRSKPEDS--SDKRL 795
Query: 228 DNERLKTTIRDLTARL 243
D LK + + T+ L
Sbjct: 796 DRPGLKEKVEEKTSSL 811
>At4g27300.1 68417.m03917 S-locus protein kinase, putative similar
to receptor protein kinase [Ipomoea trifida]
gi|836954|gb|AAC23542; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 815
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 35 NVASF-DYELMDAKHKASWKCPECCSKEPKTGN 66
N++S D +L D +HKA W +K KT N
Sbjct: 93 NLSSLGDLQLFDGEHKALWSSSSSSTKASKTAN 125
>At4g14980.1 68417.m02302 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 470
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Query: 7 CSGCRNVLDNDPCLGCCRCKAKYDLVCANVASFDYELMDAKHKASWKCPECCSKEPKTGN 66
C GC ++ D C C C CA++ L+ HK + + E S +
Sbjct: 212 CRGCVLAINGDSCYKCVECDYILHKACASLPRKKRHLLH-NHKLTLQVDEAASSDFVCTA 270
Query: 67 INTPVRSTPYSDTKSQEEDV 86
T Y + E+DV
Sbjct: 271 CRTYSNGFRYKCFEGCEDDV 290
>At1g77250.1 68414.m08997 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 522
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 5 DECSGCRNVLDNDPCLGCCRCKAKYDLVCANVASFDYELMDAKHKASWKCPECCSK 60
D C C + CL C C+ Y + CA SW C +C SK
Sbjct: 241 DICKLCGEKAEARDCLACDHCEDMYHVSCAQPGG------KGMPTHSWYCLDCTSK 290
>At5g50840.2 68418.m06299 expressed protein
Length = 405
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 192 DKIDGFRDSLEFMSTKYEEMKSKFESETSTITELKCDNERLKTTIRDLTARLNAPLRRII 251
DK F+D+L + +E K + + + I EL+ +N LK + T + + L ++
Sbjct: 305 DKFQQFQDALVKSNEVFETFKQEIDKMSKAIKELRKENAFLK----NKTEKSDITLIELV 360
Query: 252 DEYHSLITVMPDLDVFHDKL 271
+E L ++ DKL
Sbjct: 361 EERERLKKLLEKTKKQKDKL 380
>At5g50840.1 68418.m06298 expressed protein
Length = 404
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 192 DKIDGFRDSLEFMSTKYEEMKSKFESETSTITELKCDNERLKTTIRDLTARLNAPLRRII 251
DK F+D+L + +E K + + + I EL+ +N LK + T + + L ++
Sbjct: 304 DKFQQFQDALVKSNEVFETFKQEIDKMSKAIKELRKENAFLK----NKTEKSDITLIELV 359
Query: 252 DEYHSLITVMPDLDVFHDKL 271
+E L ++ DKL
Sbjct: 360 EERERLKKLLEKTKKQKDKL 379
>At4g37910.1 68417.m05361 heat shock protein 70, mitochondrial,
putative / HSP70, mitochondrial, putative strong
similarity to SP|Q01899 Heat shock 70 kDa protein,
mitochondrial precursor {Phaseolus vulgaris}
Length = 682
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 176 NTTIKKIVVTEFKNVLDKIDGFRDSLEFMSTKYEEMKSKFESETSTITEL 225
+ T+ + +V EFK D ID +D+L + K+K E ++T TE+
Sbjct: 277 DNTLLEYLVNEFKRS-DNIDLTKDNLALQRLREAAEKAKIELSSTTQTEI 325
>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
Pfam domains PF00628: PHD-finger and PF00855: PWWP
domain; identical to cDNA trithorax 3 (ATX3) partial cds
GI:15217142
Length = 799
Score = 28.3 bits (60), Expect = 6.2
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 19 CLGCCRCKAKYDLVCANVASFDYE 42
C+ CC+C + +CA+ A ++ E
Sbjct: 607 CVHCCKCATHFHAMCASRAGYNME 630
>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 7 CSGCRNVLDNDPCLGCCRCKAKYDLVCANV 36
C C + ++NDP GC +C CA++
Sbjct: 410 CEACASKINNDPFYGCEQCDFILHETCASL 439
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 20 LGCCRCKAKYDLVCANVASFDYELMDAKHKASWKCPEC--CSKEPKTGNIN 68
L C C KY C + +L H +SW CP C C +TG+ N
Sbjct: 166 LSCKDCGKKYHKNCLKSWAQHRDLF---HWSSWSCPSCRVCEVCRRTGDPN 213
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 7 CSGCRNVLDNDPCLGCCRCKAKYDLVC-----ANVASFDYELMDAKHKASWKCPECCSKE 61
C CR D + + C RC A Y C NV+S Y + KH +C C S
Sbjct: 203 CEVCRRTGDPNKFMFCKRCDAAYHCYCQHPPHKNVSSGPY--LCPKHT---RCHSCDSTV 257
Query: 62 PKTG 65
P G
Sbjct: 258 PGNG 261
>At2g39300.1 68415.m04825 expressed protein ; expression supported
by MPSS
Length = 768
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 210 EMKSKFESETSTITELKCDNERLKTTIRDLTARLNAPLRRIIDEYHSLITVMPDL 264
E+ + TS + K + +RL+ +R+L A N L+R I +H T D+
Sbjct: 355 ELDRRSSEWTSKVESFKVEEKRLRERVREL-AEHNVSLQREISTFHEKETERIDM 408
>At1g65010.1 68414.m07368 expressed protein similar to
endosome-associated protein (GI:1016368) [Homo sapiens];
similar to Centromeric protein E (CENP-E protein)
(Swiss-Prot:Q02224) [Homo sapiens]
Length = 1318
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 166 ILQQEISTALNTTIKKIVVTEFKNVLDKIDGFRDSLEFMSTKYEEMKSK--FESETSTIT 223
I Q+E + AL+ +K + +N+LD+ S+E K EE KSK ES T +
Sbjct: 382 ISQEEKTRALDN--EKAATSNIQNLLDQRTEL--SIELERCKVEEEKSKKDMESLTLALQ 437
Query: 224 ELKCDNERLKTTI 236
E ++ K T+
Sbjct: 438 EASTESSEAKATL 450
>At5g54040.1 68418.m06721 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 596
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 7 CSGCRNVLDNDPCLGCCRCKAKYDLVCANVASFDYELMDAKHK 49
C C ++ DPC C C CAN+ L+ KHK
Sbjct: 315 CRCCVLAINGDPCYRCVECDFILHKACANLPRKMRHLLH-KHK 356
>At5g54020.1 68418.m06719 expressed protein
Length = 556
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 7 CSGCRNVLDNDPCLGCCRCKAKYDLVCANV 36
C C +D DPC C C CAN+
Sbjct: 292 CRCCVLAIDGDPCYRCLECDFILHEKCANL 321
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 55 PECCSKEPKTGNINTPVRSTPYSDTKSQEEDVQGQSNVTVRKR 97
P+ P ++ TP S PY S EE+ G V +K+
Sbjct: 226 PDVTPTPPTPPSVPTPSGSPPYVPPPSDEEEAAGAKRVRCKKQ 268
>At3g05130.1 68416.m00557 expressed protein ; expression supported
by MPSS
Length = 634
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 164 RGILQQEISTALNTTIKKIVVTEFKNVLDKIDGFRDSLEFMSTKYEEMKSKFESETSTIT 223
R + ++EI I + E K ++IDG + ++ + ++ EM+ + I
Sbjct: 224 RKVREEEIEGVKKEKIGLEKIMEEKK--NEIDGLKREIKVLLSEKNEMEIVKIEQKGVIE 281
Query: 224 ELKCDNERLKTTIRDLT 240
EL+ ++L T+R LT
Sbjct: 282 ELERKLDKLNETVRSLT 298
>At2g33240.1 68415.m04072 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin my5A
(SP:Q02440) {Gallus gallus}
Length = 1770
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 174 ALNTTIKKIVVTEFKNVLDKIDGFRDSLEFMSTKYEEMKSKFESETSTITELKCDNERLK 233
A N +K +V T K + D +D D S +++K S+ ++ L +NERLK
Sbjct: 1044 AENQKLKALVSTLEKKI-DSLDRKHDVTS--SNISDQLKESASSDYEMLSNLAAENERLK 1100
Query: 234 TTIRDL 239
+ L
Sbjct: 1101 ALVSSL 1106
>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 679
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 6 ECSGCRNVLDNDPCLGCCRCKAKYDLVCANVASFDYELMDAKH 48
EC GC + + L C CK+ L CA + S + D KH
Sbjct: 522 ECMGCESSHCSPYSLECMECKSFLGLKCATLPSMTHYKHD-KH 563
>At1g19980.1 68414.m02503 cytomatrix protein-related contains weak
similarity to CAST1 [Rattus norvegicus]
gi|22138113|gb|AAL07517
Length = 342
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 197 FRDSLEFMSTKYEEMKSKFESETSTITELKCDNERLKTTIRDLTARLNAPLRRI 250
F+ ++ + TK ++++S + + +E+K +NE + +R+ +L+ ++ I
Sbjct: 20 FKSLVKILQTKQDQLESLLKDKKILESEIKTNNENWLSDVRNYEDQLSLMMKEI 73
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.132 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,390,227
Number of Sequences: 28952
Number of extensions: 202445
Number of successful extensions: 866
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 43
length of query: 285
length of database: 12,070,560
effective HSP length: 80
effective length of query: 205
effective length of database: 9,754,400
effective search space: 1999652000
effective search space used: 1999652000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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