GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001317-TA|BGIBMGA001317-PA|undefined
         (285 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017062-1|AAC47144.2|  649|Anopheles gambiae soluble guanylyl c...    26   1.1  
AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.    25   2.5  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   3.3  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    25   3.3  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    25   3.3  
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        24   5.7  
DQ370036-1|ABD18597.1|  103|Anopheles gambiae putative TIL domai...    23   9.9  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   9.9  

>AF017062-1|AAC47144.2|  649|Anopheles gambiae soluble guanylyl
           cyclase beta subunit protein.
          Length = 649

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 211 MKSKFESETSTITELKCDNERLKTTIRDL 239
           +  KFE+E    T L+   +RL+ T RDL
Sbjct: 434 LSEKFEAEYKLTTNLEILTDRLQQTYRDL 462


>AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.
          Length = 332

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 194 IDGFRDSLEFMSTKYEEMKSKFESETSTITELKCDNER 231
           +  F D + F+S+K+     KFE       +L   NER
Sbjct: 274 MQSFADRMTFLSSKFTRRVDKFEKCVVKRRQLMKQNER 311


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 205 STKYEEMKSKFESETSTITELKCDNERLKTTIRDLTARL---NAPLRRIIDEYHSLITVM 261
           S + E+M+ + +   + I  L+     L+ TI+ LTA+L      L+R+  +  SL   M
Sbjct: 769 SREIEQMQIRAQEIQTQINYLQEQQGELEATIQRLTAKLKQQEMELKRMHMDVASLTQQM 828

Query: 262 PDL 264
           P L
Sbjct: 829 PRL 831


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 203 FMSTK--YEEMKSKFESETSTITELKCDNERLKTTIRDLTARL 243
           F  TK   EE+  K E+   TI E +    +    ++DL A++
Sbjct: 736 FQQTKEEIEELNKKIETLQKTIVEARETQTQCSAKVKDLQAKI 778


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 5   DECSGCRNVLDNDPCLGCCRCKAKYDLVCANVASFDYELMDAKHKASWKCPEC 57
           DE     N    DP  G C CK   +          Y  +DA++K  + C  C
Sbjct: 447 DERGSLDNTPSCDPVTGVCSCKENVEGRHCRECRLGYFNLDAENK--FGCTPC 497


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 205 STKYEEMKSKFESETSTITELKCDNER 231
           S K+E+M  K  S     TE+ C  ER
Sbjct: 80  SAKWEQMWKKVVSPAEKETEVLCQQER 106


>DQ370036-1|ABD18597.1|  103|Anopheles gambiae putative TIL domain
          protein protein.
          Length = 103

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 12 NVLDNDPCLGCCRCKAKYDLVC 33
          ++L +DPCL    C+   + VC
Sbjct: 25 SLLSSDPCLEKRTCRKNEEFVC 46


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 186 EFKNVLDKIDGFRDSLEFMSTKYEEMKSKFESETSTITELKCDNERLKTTIRDLTARL 243
           + +N   +I+     L+    +  E K   + + S   + K   +R +   ++LTARL
Sbjct: 630 KIRNQRGQIENSIKELQERCAELREQKRDLQEQLSKYQQTKMKVKRQEQKCKELTARL 687


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,498
Number of Sequences: 2123
Number of extensions: 8926
Number of successful extensions: 26
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 10
length of query: 285
length of database: 516,269
effective HSP length: 63
effective length of query: 222
effective length of database: 382,520
effective search space: 84919440
effective search space used: 84919440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)