GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001317-TA|BGIBMGA001317-PA|undefined
         (285 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   3.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.1  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   7.1  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 173 TALNTTIKKIVVTEFKNVLDKIDGFRDSLEFMSTKYEEMKSKFESETSTITELKCD 228
           T  N+ I K ++        K+ G    ++ M T  EE+KSK       +  L+CD
Sbjct: 13  TGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSK----PGKLVPLQCD 64


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query: 167 LQQEISTALNTTIKKIVVTEFKNV 190
           ++Q++  +L+T  KKI ++  +NV
Sbjct: 249 MRQDLGASLDTQFKKIYMSRHENV 272


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 230 ERLKTTIRDLTARLNAPLRRI 250
           E++ TTI   T  +N P +R+
Sbjct: 79  EKVSTTIVPTTQEINKPFKRL 99


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,814
Number of Sequences: 429
Number of extensions: 2516
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 285
length of database: 140,377
effective HSP length: 57
effective length of query: 228
effective length of database: 115,924
effective search space: 26430672
effective search space used: 26430672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)