Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001316-TA|BGIBMGA001316-PA|undefined
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    29   1.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.7  
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb...    28   2.7  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    26   8.2  

>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 42 YPVRVEEHAQSPYRVQSQAVLTVDVSHRESK 72
          YP+ +EE  Q PYR QS      +V H ES+
Sbjct: 32 YPMNLEEKNQIPYRFQSVPDDVPEVPHIESR 62


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 167 KRKQSNKVNSYQSEYFNEVEDERPMLLPGQQNLARPFPPPPAS 209
           K K+  K   ++     E EDE P   P +    RP   PP+S
Sbjct: 736 KEKEKKKDREHRKHRETEEEDEGPPPQPARPESTRPALAPPSS 778


>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 128 DSDGTLDSLQYCKCVDTPDCNPRPG-SARACGSGKYLCCYKRKQSNKVNSYQSEYFNEVE 186
           D D  LD   +   +  P+C P PG   RAC   K   C  R+     +S  S     V+
Sbjct: 166 DEDELLDESAHDNVLKVPECKPEPGKKKRAC---KNCTCGLREMEEHESSKTSAQLEAVK 222


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 10  SHRESKVQADEIPF--REPEETEGFYNRPQGEGRYPVRVE 47
           SH++ K+Q + IPF  R+  ET   Y+    E   P +V+
Sbjct: 133 SHKQKKIQRESIPFHKRDNIETSDAYSSSILENSPPNKVQ 172



 Score = 26.2 bits (55), Expect = 8.2
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 67  SHRESKVQADEIPF--REPEETEGFYNRPQGEGRYPVRVE 104
           SH++ K+Q + IPF  R+  ET   Y+    E   P +V+
Sbjct: 133 SHKQKKIQRESIPFHKRDNIETSDAYSSSILENSPPNKVQ 172


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,423,844
Number of Sequences: 5004
Number of extensions: 58025
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 7
length of query: 401
length of database: 2,362,478
effective HSP length: 74
effective length of query: 327
effective length of database: 1,992,182
effective search space: 651443514
effective search space used: 651443514
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)