Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001316-TA|BGIBMGA001316-PA|undefined
         (401 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ...    31   1.0  
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (...    30   3.1  
At3g12910.1 68416.m01608 expressed protein                             29   4.1  
At3g16760.2 68416.m02140 tetratricopeptide repeat (TPR)-containi...    29   5.5  
At3g16760.1 68416.m02139 tetratricopeptide repeat (TPR)-containi...    29   5.5  
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ...    29   5.5  
At2g26960.1 68415.m03234 myb family transcription factor (MYB81)...    29   7.2  
At2g20950.1 68415.m02471 expressed protein                             29   7.2  
At2g26410.1 68415.m03169 calmodulin-binding family protein simil...    28   9.6  
At2g20950.4 68415.m02474 expressed protein                             28   9.6  
At2g20950.3 68415.m02473 expressed protein                             28   9.6  
At2g20950.2 68415.m02472 expressed protein                             28   9.6  
At1g61080.1 68414.m06877 proline-rich family protein                   28   9.6  

>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 435

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 5/118 (4%)

Query: 33  YNRPQGEGRYPVRVEEHAQSPYRVQSQAVLTVDVSHRESKVQADEIPFREPEETEGFYNR 92
           +N  Q    YP      A S Y+V +    T   S  + ++  +E P R P++ E  Y  
Sbjct: 286 WNGYQASSAYPPERSPLAPSSYQVNNSLAETSSFSQYQHQMSVEEFPER-PDQPECTYYL 344

Query: 93  PQGEGRYPVRVEEHAQSPYRVQSQAVLTVD---VPKNYDSDGTLDSLQYCKCVDTPDC 147
             G+ ++  + + H     R+  QA  + +   +P   D        +Y  C   P C
Sbjct: 345 KTGDCKFKYKCKYH-HPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGPAC 401


>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
           (U1-70k)
          Length = 427

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 25  EPEETEGFYNRPQGE-GRYPVRVEEHAQSPYRVQSQ 59
           EPEET G+Y   QG+  RY  R ++  +  +R + +
Sbjct: 378 EPEETRGYYEDDQGDTDRYSHRYDKMEEDDFRYERE 413



 Score = 29.9 bits (64), Expect = 3.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 82  EPEETEGFYNRPQGE-GRYPVRVEEHAQSPYRVQSQ 116
           EPEET G+Y   QG+  RY  R ++  +  +R + +
Sbjct: 378 EPEETRGYYEDDQGDTDRYSHRYDKMEEDDFRYERE 413


>At3g12910.1 68416.m01608 expressed protein 
          Length = 160

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 12  RESKVQADEIPFREPEETEG--FYNRPQGEGRYPVRVEEHAQSPYRVQSQAVLTVDVSHR 69
           ++S  Q   I F + E +      N  +G+G Y   V +  Q+PY+ Q+Q +L +D +H 
Sbjct: 65  QQSNYQEAYINFGDNESSSSTNVMNVREGKGNYERSVFQLQQTPYQHQNQPIL-MDTTHV 123

Query: 70  ES 71
           +S
Sbjct: 124 DS 125


>At3g16760.2 68416.m02140 tetratricopeptide repeat (TPR)-containing
           protein low similarity to TPR-containing protein
           involved in spermatogenesis TPIS [Mus musculus]
           GI:6272682; contains Pfam profile PF00515:
           tetratricopeptide repeat (TPR) domain
          Length = 456

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 172 NKVNSYQSEYFNEVEDERPMLLPGQQNLARPFPPPPASEINGVLGPGPAHQVG 224
           N   S  S Y +     RP   PG+ +     P P  S I   +G GP   VG
Sbjct: 31  NGQKSQTSSYSSSNSQPRPAWQPGKPSWTHQ-PAPKQSTIRSEIGSGPTSMVG 82


>At3g16760.1 68416.m02139 tetratricopeptide repeat (TPR)-containing
           protein low similarity to TPR-containing protein
           involved in spermatogenesis TPIS [Mus musculus]
           GI:6272682; contains Pfam profile PF00515:
           tetratricopeptide repeat (TPR) domain
          Length = 475

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 172 NKVNSYQSEYFNEVEDERPMLLPGQQNLARPFPPPPASEINGVLGPGPAHQVG 224
           N   S  S Y +     RP   PG+ +     P P  S I   +G GP   VG
Sbjct: 31  NGQKSQTSSYSSSNSQPRPAWQPGKPSWTHQ-PAPKQSTIRSEIGSGPTSMVG 82


>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 602

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 175 NSYQSEYFNEVEDERPMLLPGQQNLARPFPPPP 207
           +S  + +F   +D++  LLP   + A P PPPP
Sbjct: 5   SSSAASFFGVRQDDQSHLLPPNSSAAAPPPPPP 37


>At2g26960.1 68415.m03234 myb family transcription factor (MYB81)
           contains PFAM profile: myb DNA binding domain PF00249;
           identical to cDNA  putative transcription factor (MYB81)
           mRNA, partial cds GI:3941513
          Length = 427

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 18  ADEIPFREPEETEGFYN----RPQGEGR--YPVRVEEHAQSPYRVQSQAVLTVDVSHRES 71
           A+E+P R   E + F+N    R Q  G   YP  V EHA +          ++D  H + 
Sbjct: 101 AEELPGRTDNEIKNFWNTRLKRLQRLGLPVYPDEVREHAMNAATHSGLNTDSLDGHHSQE 160

Query: 72  KVQADEIPFRE 82
            ++AD +   E
Sbjct: 161 YMEADTVEIPE 171


>At2g20950.1 68415.m02471 expressed protein
          Length = 520

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 33  YNRPQGEGRYPVRVEEHAQSPYRVQSQAVLTVDVSHRESKVQADEIPFREPEETEGFYNR 92
           +   + E  Y   + +   + ++ Q QA   +  SH+   V     P R  E  E    R
Sbjct: 45  FGMKRSESEYAFPISDEQTTHWKPQQQASERIPNSHQRPPVYRYSTPERPREPDEDVTPR 104

Query: 93  PQGEGRYPVRVEEHAQSPYRVQSQAVLTVDV-PKNYDSDGTL 133
             G G  P R     ++P R +  + +T ++  + Y++D  +
Sbjct: 105 SNGSGS-PFR-SARTRTPDRRKRSSEITKELYERMYEADANV 144


>At2g26410.1 68415.m03169 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 516

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 167 KRKQS-NKVNSYQSEYFNEVEDERPMLLPGQQNLARPFPPPP 207
           KRK S  K  S +S  F+   +E P + P   ++ RP+PPPP
Sbjct: 18  KRKWSFGKQKSRES--FDFPLEETPPVDPSPSSVHRPYPPPP 57


>At2g20950.4 68415.m02474 expressed protein
          Length = 530

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 33  YNRPQGEGRYPVRVEEHAQSPYRVQSQAVLTVDVSHRESKVQADEIPFREPEETEGFYNR 92
           +   + E  Y   + +   + ++ Q QA   +  SH+   V     P R  E  E    R
Sbjct: 45  FGMKRSESEYAFPISDEQTTHWKPQQQASERIPNSHQRPPVYRYSTPERPREPDEDVTPR 104

Query: 93  PQGEGRYPVRVEEHAQSPYRVQSQAVLTVDV-PKNYDSD 130
             G G  P R     ++P R +  + +T ++  + Y++D
Sbjct: 105 SNGSGS-PFR-SARTRTPDRRKRSSEITKELYERMYEAD 141


>At2g20950.3 68415.m02473 expressed protein
          Length = 505

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 33  YNRPQGEGRYPVRVEEHAQSPYRVQSQAVLTVDVSHRESKVQADEIPFREPEETEGFYNR 92
           +   + E  Y   + +   + ++ Q QA   +  SH+   V     P R  E  E    R
Sbjct: 45  FGMKRSESEYAFPISDEQTTHWKPQQQASERIPNSHQRPPVYRYSTPERPREPDEDVTPR 104

Query: 93  PQGEGRYPVRVEEHAQSPYRVQSQAVLTVDV-PKNYDSD 130
             G G  P R     ++P R +  + +T ++  + Y++D
Sbjct: 105 SNGSGS-PFR-SARTRTPDRRKRSSEITKELYERMYEAD 141


>At2g20950.2 68415.m02472 expressed protein
          Length = 503

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 33  YNRPQGEGRYPVRVEEHAQSPYRVQSQAVLTVDVSHRESKVQADEIPFREPEETEGFYNR 92
           +   + E  Y   + +   + ++ Q QA   +  SH+   V     P R  E  E    R
Sbjct: 45  FGMKRSESEYAFPISDEQTTHWKPQQQASERIPNSHQRPPVYRYSTPERPREPDEDVTPR 104

Query: 93  PQGEGRYPVRVEEHAQSPYRVQSQAVLTVDV-PKNYDSD 130
             G G  P R     ++P R +  + +T ++  + Y++D
Sbjct: 105 SNGSGS-PFR-SARTRTPDRRKRSSEITKELYERMYEAD 141


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 190 PMLLPGQQNLARPFPPPPASEINGVLGPGP 219
           P  +P       P PPPP +  NG  GP P
Sbjct: 594 PPPMPLANGATPPPPPPPMAMANGAAGPPP 623


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,700,236
Number of Sequences: 28952
Number of extensions: 332590
Number of successful extensions: 632
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 19
length of query: 401
length of database: 12,070,560
effective HSP length: 83
effective length of query: 318
effective length of database: 9,667,544
effective search space: 3074278992
effective search space used: 3074278992
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 60 (28.3 bits)