GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001316-TA|BGIBMGA001316-PA|undefined
         (401 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0280 - 16166962-16167393,16167646-16167770,16168305-161686...    35   0.10 
02_02_0363 + 9446055-9446524,9446658-9446771,9446856-9447281,944...    30   2.8  
05_04_0051 + 17511696-17512526                                         29   5.0  
12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152...    29   6.6  
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879...    29   6.6  

>03_03_0280 -
           16166962-16167393,16167646-16167770,16168305-16168645,
           16171153-16171313
          Length = 352

 Score = 35.1 bits (77), Expect = 0.10
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 44  VRVEEHAQSPYRVQSQAVLTVDVSHRESKVQADEIPFREPEETEGFYNRPQGEGRYPVRV 103
           VR E H +    V+ +  +  +V  RE     D +P RE    E    R  GE    VR 
Sbjct: 231 VREEVHGEENMPVREEVCVEGNVPLREEVHAEDNVPLREEVNVEEVRERVNGEEDVEVRA 290

Query: 104 EEHAQSPYRVQSQAVLTVDVPKN 126
           E H +    V     L+ DV  N
Sbjct: 291 EGHVKDGREVGEDEELS-DVKAN 312



 Score = 29.9 bits (64), Expect = 3.8
 Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 7/98 (7%)

Query: 1   MRVYICLSGSH--RESKVQADEIPFREPEETEGFYNRPQGEGRYPVRVEEHAQSPYRVQS 58
           +R  +C+ G+   RE     D +P RE    E    R  GE    VR E H +    V  
Sbjct: 243 VREEVCVEGNVPLREEVHAEDNVPLREEVNVEEVRERVNGEEDVEVRAEGHVKDGREVGE 302

Query: 59  QAVLTVDVSHRESKVQADEIPFREPEETEGFYNRPQGE 96
              L+ DV      V    + FRE   T+  Y+R   E
Sbjct: 303 DEELS-DVKANAKDV---SMGFRELVRTK-LYSRQDCE 335


>02_02_0363 +
           9446055-9446524,9446658-9446771,9446856-9447281,
           9447812-9447893,9447964-9448020,9448633-9448881,
           9448978-9449109,9449163-9449291
          Length = 552

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 138 YCKCVDTPDCNPRPGSARACGS-GKYLCCYKRKQSNKVNSYQSEYFNEVEDERPMLLPGQ 196
           Y +C  +  C  R    R+      ++  Y  + ++   ++++       ++ P      
Sbjct: 197 YYRCSSSKGCPARKQVERSRSDPNTFILTYTGEHNHSAPTHRNSLAGTTRNKLPSSSAAS 256

Query: 197 QNLARPFPPPPASEINGVLGPGPAHQVGL--LGPFDTP 232
              A+P PPPP+  + G  G G A   GL    P  TP
Sbjct: 257 AASAQPQPPPPSVVVVGA-GGGGAEAAGLSPTTPLRTP 293


>05_04_0051 + 17511696-17512526
          Length = 276

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 194 PGQQNLARPFPPPPASEINGVLG----PGPAHQVGLLGP 228
           PG  N   P  PPP+ EI    G    PGP++ +  +GP
Sbjct: 179 PGPSNPIDPIGPPPSDEIYNRGGHHTAPGPSNPIDPIGP 217



 Score = 28.7 bits (61), Expect = 8.7
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 194 PGQQNLARPFPPPPASEINGVLG----PGPAHQVGLLGP 228
           PG  N   P  PPP+ EI    G    PGP+  +  +GP
Sbjct: 206 PGPSNPIDPIGPPPSDEIYNRGGHHTTPGPSDPIDPIGP 244


>12_01_1116 +
           11914352-11914415,11915049-11915158,11915254-11915295,
           11916263-11916430,11916506-11916682,11916848-11917051,
           11917125-11917319
          Length = 319

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 202 PFPPPPASEINGVLGPGPAHQVGLLGPFDTPQGF 235
           PFPP P+ +  G+      H + +L  F+TP GF
Sbjct: 8   PFPPKPSLKEQGLKDHNTYHCLIVLVLFETPSGF 41


>05_06_0277 +
           26885621-26886064,26886148-26886317,26887038-26887941,
           26888544-26888575,26888862-26888928,26889116-26889173,
           26889329-26889421,26890366-26890480,26890847-26890894,
           26891012-26891057,26891161-26891231,26891865-26891870,
           26891991-26892038,26892439-26892488,26892892-26893154
          Length = 804

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 11/112 (9%)

Query: 8   SGSHRE-SKVQADEIPFREPEETEGFYNRPQGEGRYPVRVEEHAQSPYRVQSQAVLTVDV 66
           + SHRE S V+ +  P R P  + G    PQ +     RV+E  +SP + QS++      
Sbjct: 266 TSSHRERSPVRRNGSPRRSPVRSIG--RSPQRD-----RVKEQVRSPKQAQSRSRSPSPA 318

Query: 67  SHRESKVQADEIP--FREPEETEGFYNRPQGEGRYPVRVEEHAQSPYRVQSQ 116
             RES+  +       R   E EG  +  +G+ R     EE     YR + +
Sbjct: 319 RKRESRSPSPRSKRLRRAQSEREG-ADATEGDRRKTTSREERDSGRYRERDE 369


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,922,588
Number of Sequences: 37544
Number of extensions: 439249
Number of successful extensions: 985
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 978
Number of HSP's gapped (non-prelim): 10
length of query: 401
length of database: 14,793,348
effective HSP length: 84
effective length of query: 317
effective length of database: 11,639,652
effective search space: 3689769684
effective search space used: 3689769684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)