GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001316-TA|BGIBMGA001316-PA|undefined
         (401 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    29   0.23 
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    28   0.40 
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    26   2.1  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   2.8  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 29.1 bits (62), Expect = 0.23
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 275 GPDGPTGVIGPDGPRDV-GF-SESAQRG 300
           GP GP G  GP GP+ + GF  E  +RG
Sbjct: 414 GPKGPRGYEGPQGPKGMDGFDGEKGERG 441



 Score = 24.2 bits (50), Expect = 6.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 275 GPDGPTGVIGPDGP 288
           GP G  G++GP GP
Sbjct: 631 GPKGEPGLLGPPGP 644


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 28.3 bits (60), Expect = 0.40
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 153 SARACGSGKYLCCYKRKQSNKV-NSYQSEYFNEVEDERPMLLPG 195
           SA A    +Y  C KRK+ N++ N  + E++N + +++P    G
Sbjct: 369 SALAKRLRRYAECSKRKEQNRMFNINEREFYNWIRNDKPNFREG 412


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 262 IGPNRDQNQAVLVGPDGPTGVIGPDGPRDVGFSESAQR 299
           +GP+  +  +V     G TG+  P     +G  ESA R
Sbjct: 10  LGPDGRRRSSVYTTSSGETGITLPGDDHSIGRDESAGR 47


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 275 GPDGPTGVIGPDGPR 289
           GP GP+G +GP G +
Sbjct: 582 GPSGPSGPLGPQGEK 596



 Score = 24.2 bits (50), Expect = 6.4
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 263 GPNRDQNQAVLVGPDGPTGVIGPDGPR-DVG 292
           G N +     L G DG  G+ GP GP+ D G
Sbjct: 314 GQNGEPGVPGLRGNDGIPGLEGPSGPKGDAG 344


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 346,680
Number of Sequences: 2123
Number of extensions: 14400
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 21
length of query: 401
length of database: 516,269
effective HSP length: 65
effective length of query: 336
effective length of database: 378,274
effective search space: 127100064
effective search space used: 127100064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 49 (23.8 bits)