Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001316-TA|BGIBMGA001316-PA|undefined
(401 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70034-11|CAI79119.1| 558|Caenorhabditis elegans Hypothetical p... 32 0.83
Z70034-4|CAA93860.1| 618|Caenorhabditis elegans Hypothetical pr... 32 0.83
Z70034-3|CAA93854.2| 621|Caenorhabditis elegans Hypothetical pr... 32 0.83
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 32 0.83
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 32 0.83
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 32 0.83
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 32 0.83
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 32 0.83
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 30 2.5
U41748-3|AAA83336.1| 452|Caenorhabditis elegans Dumpy : shorter... 30 2.5
Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical pr... 29 4.4
J03146-1|AAA65468.1| 324|Caenorhabditis elegans collagen protein. 29 4.4
Z47808-4|CAA87772.1| 235|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 29 7.7
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 29 7.7
Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical pr... 29 7.7
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr... 29 7.7
>Z70034-11|CAI79119.1| 558|Caenorhabditis elegans Hypothetical
protein C18E9.3c protein.
Length = 558
Score = 31.9 bits (69), Expect = 0.83
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 167 KRKQSNKVNSYQSEYFNEVEDERPMLLPGQQNLARPF--PPPPASEINGVLGPGPAHQ 222
K Q N V Y E E+ ++ ++P ++ F PPP SE GV P Q
Sbjct: 169 KMTQQNMVEHYGEELSRELMEQPAEIVPPERQYTPDFTQPPPSVSESGGVYNGPPGFQ 226
>Z70034-4|CAA93860.1| 618|Caenorhabditis elegans Hypothetical
protein C18E9.3b protein.
Length = 618
Score = 31.9 bits (69), Expect = 0.83
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 167 KRKQSNKVNSYQSEYFNEVEDERPMLLPGQQNLARPF--PPPPASEINGVLGPGPAHQ 222
K Q N V Y E E+ ++ ++P ++ F PPP SE GV P Q
Sbjct: 229 KMTQQNMVEHYGEELSRELMEQPAEIVPPERQYTPDFTQPPPSVSESGGVYNGPPGFQ 286
>Z70034-3|CAA93854.2| 621|Caenorhabditis elegans Hypothetical
protein C18E9.3a protein.
Length = 621
Score = 31.9 bits (69), Expect = 0.83
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 167 KRKQSNKVNSYQSEYFNEVEDERPMLLPGQQNLARPF--PPPPASEINGVLGPGPAHQ 222
K Q N V Y E E+ ++ ++P ++ F PPP SE GV P Q
Sbjct: 232 KMTQQNMVEHYGEELSRELMEQPAEIVPPERQYTPDFTQPPPSVSESGGVYNGPPGFQ 289
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 31.9 bits (69), Expect = 0.83
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 122 DVPKNYDSDGTLDSLQYCKCVD-----TPDCNPRPGS------ARACGSGKYLCCYKRKQ 170
D N D T +S + C+C D +PD + RPG C +GK+ C
Sbjct: 1389 DCSPNADCIDTPESYK-CRCRDDFVDESPDSSRRPGRICRPALVDECRTGKHDCHVNAIC 1447
Query: 171 SNKVNSYQSEYFNEVEDERPMLL--PGQQNLARPFPPPPASEING 213
+ Y + + D P PG+ RP PPPP ++G
Sbjct: 1448 QDLPQGYTCQCSADFVDVSPHRASHPGRLCQPRPTPPPPECRLDG 1492
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 31.9 bits (69), Expect = 0.83
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 122 DVPKNYDSDGTLDSLQYCKCVD-----TPDCNPRPGS------ARACGSGKYLCCYKRKQ 170
D N D T +S + C+C D +PD + RPG C +GK+ C
Sbjct: 1973 DCSPNADCIDTPESYK-CRCRDDFVDESPDSSRRPGRICRPALVDECRTGKHDCHVNAIC 2031
Query: 171 SNKVNSYQSEYFNEVEDERPMLL--PGQQNLARPFPPPPASEING 213
+ Y + + D P PG+ RP PPPP ++G
Sbjct: 2032 QDLPQGYTCQCSADFVDVSPHRASHPGRLCQPRPTPPPPECRLDG 2076
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 31.9 bits (69), Expect = 0.83
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 122 DVPKNYDSDGTLDSLQYCKCVD-----TPDCNPRPGS------ARACGSGKYLCCYKRKQ 170
D N D T +S + C+C D +PD + RPG C +GK+ C
Sbjct: 1389 DCSPNADCIDTPESYK-CRCRDDFVDESPDSSRRPGRICRPALVDECRTGKHDCHVNAIC 1447
Query: 171 SNKVNSYQSEYFNEVEDERPMLL--PGQQNLARPFPPPPASEING 213
+ Y + + D P PG+ RP PPPP ++G
Sbjct: 1448 QDLPQGYTCQCSADFVDVSPHRASHPGRLCQPRPTPPPPECRLDG 1492
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 31.9 bits (69), Expect = 0.83
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 122 DVPKNYDSDGTLDSLQYCKCVD-----TPDCNPRPGS------ARACGSGKYLCCYKRKQ 170
D N D T +S + C+C D +PD + RPG C +GK+ C
Sbjct: 1973 DCSPNADCIDTPESYK-CRCRDDFVDESPDSSRRPGRICRPALVDECRTGKHDCHVNAIC 2031
Query: 171 SNKVNSYQSEYFNEVEDERPMLL--PGQQNLARPFPPPPASEING 213
+ Y + + D P PG+ RP PPPP ++G
Sbjct: 2032 QDLPQGYTCQCSADFVDVSPHRASHPGRLCQPRPTPPPPECRLDG 2076
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 31.9 bits (69), Expect = 0.83
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 122 DVPKNYDSDGTLDSLQYCKCVD-----TPDCNPRPGS------ARACGSGKYLCCYKRKQ 170
D N D T +S + C+C D +PD + RPG C +GK+ C
Sbjct: 1973 DCSPNADCIDTPESYK-CRCRDDFVDESPDSSRRPGRICRPALVDECRTGKHDCHVNAIC 2031
Query: 171 SNKVNSYQSEYFNEVEDERPMLL--PGQQNLARPFPPPPASEING 213
+ Y + + D P PG+ RP PPPP ++G
Sbjct: 2032 QDLPQGYTCQCSADFVDVSPHRASHPGRLCQPRPTPPPPECRLDG 2076
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 30.3 bits (65), Expect = 2.5
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 190 PMLLPGQQNLARPFPPPPASEI--NGVLGP-GPAHQVGLLGPFDTPQG 234
P PG + P PP +E +G+ GP GP + G+ GP TP G
Sbjct: 218 PAGYPGPRGAPGPVGPPGVAEEGPDGLPGPAGPPGKPGMPGPMGTPGG 265
>U41748-3|AAA83336.1| 452|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 8 protein.
Length = 452
Score = 30.3 bits (65), Expect = 2.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 274 VGPDGPTGVIGPDGPRDVGFSESAQRG 300
+GP GP G+ GP GP G ++ Q G
Sbjct: 214 LGPPGPQGMKGPPGPSGKGSNQPGQPG 240
>Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical
protein B0491.2 protein.
Length = 324
Score = 29.5 bits (63), Expect = 4.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 263 GPNRDQNQAVLVGPDGPTGVIGPDGP 288
GP Q L GP G G +GP+GP
Sbjct: 249 GPTGPAGQNGLHGPPGEPGTVGPEGP 274
>J03146-1|AAA65468.1| 324|Caenorhabditis elegans collagen protein.
Length = 324
Score = 29.5 bits (63), Expect = 4.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 263 GPNRDQNQAVLVGPDGPTGVIGPDGP 288
GP Q L GP G G +GP+GP
Sbjct: 249 GPTGPAGQNGLHGPPGEPGTVGPEGP 274
>Z47808-4|CAA87772.1| 235|Caenorhabditis elegans Hypothetical
protein D2013.6 protein.
Length = 235
Score = 29.1 bits (62), Expect = 5.8
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 194 PGQQNLARPF---PPPPASEINGVLGPGPAHQVGLLGPFDTPQGF 235
P Q N +R F PPP I GP P ++ + G F+ P +
Sbjct: 178 PDQPNPSRVFMSSAPPPYPGIGPERGPHPTEELHVAGQFEAPPAY 222
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 28.7 bits (61), Expect = 7.7
Identities = 14/31 (45%), Positives = 14/31 (45%)
Query: 202 PFPPPPASEINGVLGPGPAHQVGLLGPFDTP 232
P PP P G GPGPA G GP P
Sbjct: 180 PGPPGPDGAPGGGSGPGPAGPAGPPGPDGNP 210
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 28.7 bits (61), Expect = 7.7
Identities = 14/31 (45%), Positives = 14/31 (45%)
Query: 202 PFPPPPASEINGVLGPGPAHQVGLLGPFDTP 232
P PP P G GPGPA G GP P
Sbjct: 180 PGPPGPDGAPGGGSGPGPAGPAGPPGPDGNP 210
>Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical
protein F15A2.1 protein.
Length = 291
Score = 28.7 bits (61), Expect = 7.7
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 263 GPNRDQNQAVLVGPDGPTGVIGPDGP 288
GPN Q GP GP G G DGP
Sbjct: 170 GPNGHPGQPGRPGPAGPAGPEGKDGP 195
>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
C38D4.3 protein.
Length = 1784
Score = 28.7 bits (61), Expect = 7.7
Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 20/165 (12%)
Query: 11 HRESKVQADEIP--FREPEETEGFYNRPQGEGRYPVRVE----EHAQSPYRVQSQAVLTV 64
+ E V+++E+ +EPE+TE P+ E PV E E +S ++Q +
Sbjct: 1267 NEEEVVESEEVQQDAKEPEKTEKRQEEPEPEVMQPVIPEEPQNESLESSIKLQEELQEEP 1326
Query: 65 DV----------SHRESKVQADEIPFREPEETEGFYNRPQGEGRYPVRVEEHAQSPYRVQ 114
D+ +E V+ D P R + + Q E R P + E + P
Sbjct: 1327 DIVPTGDEDTADKVQEQAVEEDRPPSRNTRSSSVQKSTSQVEDRDPKELVEEERPP---- 1382
Query: 115 SQAVLTVDVPKNYDSDGTLDSLQYCKCVDTPDCNPRPGSARACGS 159
S+ + V K+ + + T +S + + P N R S + S
Sbjct: 1383 SRNTRSASVQKSSNQEKTSESGEVTEEDRPPSRNTRSASVQKSSS 1427
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.136 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,106,236
Number of Sequences: 27539
Number of extensions: 361480
Number of successful extensions: 2024
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1964
Number of HSP's gapped (non-prelim): 71
length of query: 401
length of database: 12,573,161
effective HSP length: 83
effective length of query: 318
effective length of database: 10,287,424
effective search space: 3271400832
effective search space used: 3271400832
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)
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