GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001316-TA|BGIBMGA001316-PA|undefined
         (401 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        27   0.28 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        27   0.28 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        27   0.28 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   3.5  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.28
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 101 VRVEEHAQSPYRVQSQAVLTVDVPKN 126
           VR +E   +PYR ++ AV+  D+P N
Sbjct: 111 VRTKEEPHAPYRYEAVAVIHKDLPIN 136


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.28
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 101 VRVEEHAQSPYRVQSQAVLTVDVPKN 126
           VR +E   +PYR ++ AV+  D+P N
Sbjct: 111 VRTKEEPHAPYRYEAVAVIHKDLPIN 136


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.28
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 101 VRVEEHAQSPYRVQSQAVLTVDVPKN 126
           VR +E   +PYR ++ AV+  D+P N
Sbjct: 111 VRTKEEPHAPYRYEAVAVIHKDLPIN 136


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 166 YKRKQSNKVNSYQSEYFNEVEDER-PMLLPGQQNLARPFPPPP 207
           Y    +N  N+Y+  Y+N +  E+ P+ +P        FPP P
Sbjct: 338 YNNYNNNNYNNYKKLYYNIINIEQIPVPVPVPIYCGN-FPPRP 379


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,460
Number of Sequences: 429
Number of extensions: 4859
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 401
length of database: 140,377
effective HSP length: 59
effective length of query: 342
effective length of database: 115,066
effective search space: 39352572
effective search space used: 39352572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)