Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001316-TA|BGIBMGA001316-PA|undefined
(401 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ... 31 1.0
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 30 3.1
At3g12910.1 68416.m01608 expressed protein 29 4.1
At3g16760.2 68416.m02140 tetratricopeptide repeat (TPR)-containi... 29 5.5
At3g16760.1 68416.m02139 tetratricopeptide repeat (TPR)-containi... 29 5.5
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ... 29 5.5
At2g26960.1 68415.m03234 myb family transcription factor (MYB81)... 29 7.2
At2g20950.1 68415.m02471 expressed protein 29 7.2
At2g26410.1 68415.m03169 calmodulin-binding family protein simil... 28 9.6
At2g20950.4 68415.m02474 expressed protein 28 9.6
At2g20950.3 68415.m02473 expressed protein 28 9.6
At2g20950.2 68415.m02472 expressed protein 28 9.6
At1g61080.1 68414.m06877 proline-rich family protein 28 9.6
>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 31.5 bits (68), Expect = 1.0
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Query: 33 YNRPQGEGRYPVRVEEHAQSPYRVQSQAVLTVDVSHRESKVQADEIPFREPEETEGFYNR 92
+N Q YP A S Y+V + T S + ++ +E P R P++ E Y
Sbjct: 286 WNGYQASSAYPPERSPLAPSSYQVNNSLAETSSFSQYQHQMSVEEFPER-PDQPECTYYL 344
Query: 93 PQGEGRYPVRVEEHAQSPYRVQSQAVLTVD---VPKNYDSDGTLDSLQYCKCVDTPDC 147
G+ ++ + + H R+ QA + + +P D +Y C P C
Sbjct: 345 KTGDCKFKYKCKYH-HPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGPAC 401
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 29.9 bits (64), Expect = 3.1
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 25 EPEETEGFYNRPQGE-GRYPVRVEEHAQSPYRVQSQ 59
EPEET G+Y QG+ RY R ++ + +R + +
Sbjct: 378 EPEETRGYYEDDQGDTDRYSHRYDKMEEDDFRYERE 413
Score = 29.9 bits (64), Expect = 3.1
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 82 EPEETEGFYNRPQGE-GRYPVRVEEHAQSPYRVQSQ 116
EPEET G+Y QG+ RY R ++ + +R + +
Sbjct: 378 EPEETRGYYEDDQGDTDRYSHRYDKMEEDDFRYERE 413
>At3g12910.1 68416.m01608 expressed protein
Length = 160
Score = 29.5 bits (63), Expect = 4.1
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 12 RESKVQADEIPFREPEETEG--FYNRPQGEGRYPVRVEEHAQSPYRVQSQAVLTVDVSHR 69
++S Q I F + E + N +G+G Y V + Q+PY+ Q+Q +L +D +H
Sbjct: 65 QQSNYQEAYINFGDNESSSSTNVMNVREGKGNYERSVFQLQQTPYQHQNQPIL-MDTTHV 123
Query: 70 ES 71
+S
Sbjct: 124 DS 125
>At3g16760.2 68416.m02140 tetratricopeptide repeat (TPR)-containing
protein low similarity to TPR-containing protein
involved in spermatogenesis TPIS [Mus musculus]
GI:6272682; contains Pfam profile PF00515:
tetratricopeptide repeat (TPR) domain
Length = 456
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 172 NKVNSYQSEYFNEVEDERPMLLPGQQNLARPFPPPPASEINGVLGPGPAHQVG 224
N S S Y + RP PG+ + P P S I +G GP VG
Sbjct: 31 NGQKSQTSSYSSSNSQPRPAWQPGKPSWTHQ-PAPKQSTIRSEIGSGPTSMVG 82
>At3g16760.1 68416.m02139 tetratricopeptide repeat (TPR)-containing
protein low similarity to TPR-containing protein
involved in spermatogenesis TPIS [Mus musculus]
GI:6272682; contains Pfam profile PF00515:
tetratricopeptide repeat (TPR) domain
Length = 475
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 172 NKVNSYQSEYFNEVEDERPMLLPGQQNLARPFPPPPASEINGVLGPGPAHQVG 224
N S S Y + RP PG+ + P P S I +G GP VG
Sbjct: 31 NGQKSQTSSYSSSNSQPRPAWQPGKPSWTHQ-PAPKQSTIRSEIGSGPTSMVG 82
>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 602
Score = 29.1 bits (62), Expect = 5.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 175 NSYQSEYFNEVEDERPMLLPGQQNLARPFPPPP 207
+S + +F +D++ LLP + A P PPPP
Sbjct: 5 SSSAASFFGVRQDDQSHLLPPNSSAAAPPPPPP 37
>At2g26960.1 68415.m03234 myb family transcription factor (MYB81)
contains PFAM profile: myb DNA binding domain PF00249;
identical to cDNA putative transcription factor (MYB81)
mRNA, partial cds GI:3941513
Length = 427
Score = 28.7 bits (61), Expect = 7.2
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 18 ADEIPFREPEETEGFYN----RPQGEGR--YPVRVEEHAQSPYRVQSQAVLTVDVSHRES 71
A+E+P R E + F+N R Q G YP V EHA + ++D H +
Sbjct: 101 AEELPGRTDNEIKNFWNTRLKRLQRLGLPVYPDEVREHAMNAATHSGLNTDSLDGHHSQE 160
Query: 72 KVQADEIPFRE 82
++AD + E
Sbjct: 161 YMEADTVEIPE 171
>At2g20950.1 68415.m02471 expressed protein
Length = 520
Score = 28.7 bits (61), Expect = 7.2
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 33 YNRPQGEGRYPVRVEEHAQSPYRVQSQAVLTVDVSHRESKVQADEIPFREPEETEGFYNR 92
+ + E Y + + + ++ Q QA + SH+ V P R E E R
Sbjct: 45 FGMKRSESEYAFPISDEQTTHWKPQQQASERIPNSHQRPPVYRYSTPERPREPDEDVTPR 104
Query: 93 PQGEGRYPVRVEEHAQSPYRVQSQAVLTVDV-PKNYDSDGTL 133
G G P R ++P R + + +T ++ + Y++D +
Sbjct: 105 SNGSGS-PFR-SARTRTPDRRKRSSEITKELYERMYEADANV 144
>At2g26410.1 68415.m03169 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 516
Score = 28.3 bits (60), Expect = 9.6
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 167 KRKQS-NKVNSYQSEYFNEVEDERPMLLPGQQNLARPFPPPP 207
KRK S K S +S F+ +E P + P ++ RP+PPPP
Sbjct: 18 KRKWSFGKQKSRES--FDFPLEETPPVDPSPSSVHRPYPPPP 57
>At2g20950.4 68415.m02474 expressed protein
Length = 530
Score = 28.3 bits (60), Expect = 9.6
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 33 YNRPQGEGRYPVRVEEHAQSPYRVQSQAVLTVDVSHRESKVQADEIPFREPEETEGFYNR 92
+ + E Y + + + ++ Q QA + SH+ V P R E E R
Sbjct: 45 FGMKRSESEYAFPISDEQTTHWKPQQQASERIPNSHQRPPVYRYSTPERPREPDEDVTPR 104
Query: 93 PQGEGRYPVRVEEHAQSPYRVQSQAVLTVDV-PKNYDSD 130
G G P R ++P R + + +T ++ + Y++D
Sbjct: 105 SNGSGS-PFR-SARTRTPDRRKRSSEITKELYERMYEAD 141
>At2g20950.3 68415.m02473 expressed protein
Length = 505
Score = 28.3 bits (60), Expect = 9.6
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 33 YNRPQGEGRYPVRVEEHAQSPYRVQSQAVLTVDVSHRESKVQADEIPFREPEETEGFYNR 92
+ + E Y + + + ++ Q QA + SH+ V P R E E R
Sbjct: 45 FGMKRSESEYAFPISDEQTTHWKPQQQASERIPNSHQRPPVYRYSTPERPREPDEDVTPR 104
Query: 93 PQGEGRYPVRVEEHAQSPYRVQSQAVLTVDV-PKNYDSD 130
G G P R ++P R + + +T ++ + Y++D
Sbjct: 105 SNGSGS-PFR-SARTRTPDRRKRSSEITKELYERMYEAD 141
>At2g20950.2 68415.m02472 expressed protein
Length = 503
Score = 28.3 bits (60), Expect = 9.6
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 33 YNRPQGEGRYPVRVEEHAQSPYRVQSQAVLTVDVSHRESKVQADEIPFREPEETEGFYNR 92
+ + E Y + + + ++ Q QA + SH+ V P R E E R
Sbjct: 45 FGMKRSESEYAFPISDEQTTHWKPQQQASERIPNSHQRPPVYRYSTPERPREPDEDVTPR 104
Query: 93 PQGEGRYPVRVEEHAQSPYRVQSQAVLTVDV-PKNYDSD 130
G G P R ++P R + + +T ++ + Y++D
Sbjct: 105 SNGSGS-PFR-SARTRTPDRRKRSSEITKELYERMYEAD 141
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 28.3 bits (60), Expect = 9.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 190 PMLLPGQQNLARPFPPPPASEINGVLGPGP 219
P +P P PPPP + NG GP P
Sbjct: 594 PPPMPLANGATPPPPPPPMAMANGAAGPPP 623
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.136 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,700,236
Number of Sequences: 28952
Number of extensions: 332590
Number of successful extensions: 632
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 19
length of query: 401
length of database: 12,070,560
effective HSP length: 83
effective length of query: 318
effective length of database: 9,667,544
effective search space: 3074278992
effective search space used: 3074278992
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 60 (28.3 bits)
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