Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001315-TA|BGIBMGA001315-PA|IPR006578|MADF,
IPR004210|BESS motif
         (232 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595...    28   5.6  
05_01_0266 - 2040555-2040722,2041248-2041349,2041461-2041958,204...    28   7.4  

>05_03_0608 +
           16153992-16154960,16158959-16159168,16159252-16159512,
           16160153-16160197,16160324-16160410,16160679-16160774
          Length = 555

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 9/69 (13%)

Query: 26  DRRCTEYRNKYDRLKAWEEIC------EVLDPNFHRVN--NKHKNKSVLLMSKKWTNIRD 77
           D +C   R +Y+R+K W++ C       +++ N   +N  ++ K + +L M K +   + 
Sbjct: 467 DAKCCALR-EYERIKVWQQYCFTKLFRSLVENNRSELNRLDREKKEDMLEMIKGYVTSQA 525

Query: 78  AYVKSLRMG 86
           AY + +  G
Sbjct: 526 AYAEKIVEG 534


>05_01_0266 -
           2040555-2040722,2041248-2041349,2041461-2041958,
           2042372-2042479,2042559-2042753
          Length = 356

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 165 HFL---MNLVQR-EENEDRAFFTSITSAVSSLSERSKFEFRVQVLKLLNSLRMKDSSMGV 220
           HFL    N VQ   E +D     S+T A +  S  S    + Q L LL  L  KDSS+  
Sbjct: 103 HFLNNYSNYVQYFHELDDLRSKLSVTQATAEASAASAKSAQSQCLSLLKELNEKDSSL-K 161

Query: 221 KRERNI 226
           + ER +
Sbjct: 162 EHERRV 167


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.130    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,536,338
Number of Sequences: 37544
Number of extensions: 192848
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 2
length of query: 232
length of database: 14,793,348
effective HSP length: 80
effective length of query: 152
effective length of database: 11,789,828
effective search space: 1792053856
effective search space used: 1792053856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)