Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001315-TA|BGIBMGA001315-PA|IPR006578|MADF,
IPR004210|BESS motif
(232 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 27 2.3
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 27 2.3
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.1
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 4.1
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 26 4.1
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 5.4
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 25 7.1
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 7.1
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p... 25 7.1
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch... 25 7.1
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 9.4
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 22 KCLWDRRCTEYRNKYDRLKAWEEICEVLD 50
KCLWD + ++D+ + +E+I + LD
Sbjct: 431 KCLWDILACKQAGEFDKSEDFEKIVQSLD 459
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 28 RCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSVLLMSKKWTNIR 76
R T R K D EE+C+++D KH++K ++L K TN++
Sbjct: 51 RITFIRAK-DNYNPAEELCQLIDEQNAHNEAKHQSKEIML--PKETNVK 96
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 2/105 (1%)
Query: 76 RDAYVKSLRMGRNRVKPYIHAEALEFLDAVFVYKTKSSQKVDSRLSDEDNATED--SIEW 133
RDA K + + P + + Y+ ++ + +E+ ED S W
Sbjct: 156 RDAMFKESWKNKCFISPQKDNQGFSKSKHLSTYEGETENGFSTSTEEEEEEEEDIVSASW 215
Query: 134 LNEVYVDESAVXXXXXXXXXXXXXQDENSIAHFLMNLVQREENED 178
++ + +D ++ DE S FL+ L+ + + D
Sbjct: 216 VDNLDMDMASFNSHRERFLTEHVNMDERSDDDFLLGLISSDSSVD 260
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 158 QDENSIAHFLMNLVQREENEDRAFFTSITSAVSSLSERSKF 198
Q E I F V+ +E+ A + AVS + RSKF
Sbjct: 429 QTEKEITDFCQKGVEESASEEEAINWKLLMAVSKRASRSKF 469
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 167 LMNLVQREENEDRAFFTSITSAVSSLSERSKFEFRVQVLKLLNSLRMKD 215
L N+ + EDR TS+ ++ SL+ R KF Q SL K+
Sbjct: 625 LFNMASQFTAEDRFVATSVLQSIESLN-RVKFHSATQPFSQTTSLLFKE 672
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 159 DENSIAHFLMNLVQREENEDRAFFTSITSAVSSLSERSKFEFRVQVLKLLNSLRMKD 215
D+N++A F++NL + +N D F ++ S ++ F + +L+ ++ KD
Sbjct: 27 DDNTLAEFIINLHDQSKNYDE-FKNNVLSCGGEFTD----SFLQNISRLIKEIKPKD 78
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 183 TSITSAVSSLSERSKFEFRVQVLKLLNSLRMKDSSMGVKRERN 225
T + S + S R K + R +L + +LR+K + ++ ERN
Sbjct: 203 TKVRSPIPSRRGRRKRKMRGPILPVKKNLRVKKAMSPLRAERN 245
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 176 NEDRAFFTSITSAVSSLSERSKFEFRVQVLKLLNS 210
++ RAF ++ A+ S + F F ++ +K+ NS
Sbjct: 171 SDHRAFNIFVSKAIQSYDDEQSFAFLLEAVKMDNS 205
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 82 SLRMGRNRVKPYIHAEALEFLDAVFVYKTKSSQKVDSRLSDEDNATEDSIEWLNEVYVDE 141
SL +GRN + P +AL + K+K + + +L D ++ S V+ D
Sbjct: 506 SLSVGRNSLHPVDDLKALSVAKTLLSEKSKQFSETNQKLLDAISSDSSSSTIQQRVHEDI 565
Query: 142 SAV 144
+ +
Sbjct: 566 NVI 568
>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 104 AVFVYKTKSSQKVDSRLSDEDNATEDSIEWLNEVYVD 140
A++V TK D TED +EWL+ D
Sbjct: 342 AIYVLDTKGDTSNRRLCPGYDAITEDQLEWLSSKVAD 378
>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 7.1
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 67 LMSKKWTNIRDAYVKSLRMGRNRVKPYIHAEALEFLDAVFVYKTKSSQKVDSRLSDEDNA 126
L WT DA VK+L P + +F DAVF K + + + SD+ A
Sbjct: 290 LYGNLWTVPLDADVKALPEPTKITVPTVQGNYRDFYDAVFEEILKKANEFPIK-SDQVLA 348
Query: 127 TEDSIE 132
E +E
Sbjct: 349 VEKIME 354
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 32 YRNKYDRLKAWEEICEVLDPNFHRVNNKHKN 62
Y+ KY+ L+ E + +D NF ++ KH++
Sbjct: 1170 YKKKYEGLQLDLEGLKDVDTNFQELSKKHRD 1200
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.130 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 992,613
Number of Sequences: 5004
Number of extensions: 37954
Number of successful extensions: 141
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 12
length of query: 232
length of database: 2,362,478
effective HSP length: 71
effective length of query: 161
effective length of database: 2,007,194
effective search space: 323158234
effective search space used: 323158234
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
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