GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001315-TA|BGIBMGA001315-PA|IPR006578|MADF,
IPR004210|BESS motif
         (232 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   1e-04
SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_11671| Best HMM Match : C2 (HMM E-Value=4e-39)                      30   1.4  
SB_35182| Best HMM Match : CUB (HMM E-Value=0)                         30   1.4  
SB_15762| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)                    28   5.7  
SB_17198| Best HMM Match : HEAT (HMM E-Value=1.8e-15)                  28   5.7  
SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_25525| Best HMM Match : ABC1 (HMM E-Value=1.19993e-41)              28   7.5  
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)         27   10.0 

>SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 10/121 (8%)

Query: 9   NEAIELIGLVRERKCLWDRRCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSVLLM 68
           +E  +LI L  ER CLWD    EY  K +R +A EEI E +    + V +K K+    L 
Sbjct: 35  HEVEQLIDLFEERPCLWDVSNKEYYQKGNRQRAEEEIAEQMGITLNDVKSKIKS----LR 90

Query: 69  SKKWTNIRDAYVKSLRMGRNRVKPYIHAEALEFL-DAVFVYKTKSSQKVDSRLSDEDNAT 127
           S+     R+ Y   +R   N V  +I    L+FL D +   + + S +V   ++  D   
Sbjct: 91  SQLG---REIY--KIRTSENYVPIWIFWHKLQFLADVMREGRKRDSMRVSMAIASPDRVP 145

Query: 128 E 128
           +
Sbjct: 146 D 146


>SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 6   PAKNEAIELIGLVRERKCLWDRRCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSV 65
           PA     E  G VRE+K     +C + +     +  W  +  + D   H ++++ K+   
Sbjct: 392 PASESEFEYSGWVREQKS----KCRKIQKGVQGMNNWSPL-NLKDTTTHSLDSEGKDCEA 446

Query: 66  LLMSKKWTNIRDAYVKSLRMGRNRV 90
              SKKWT  +    K L+   ++V
Sbjct: 447 SFKSKKWTKEQRRKCKHLQHSSHQV 471


>SB_11671| Best HMM Match : C2 (HMM E-Value=4e-39)
          Length = 407

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 58  NKHKNKSVLLMSKKWTNIRDAY-VKSLRMGRNRVKPYIHAEALEFLDAVFVYKTKSSQKV 116
           N    K ++    K   +RD   VK L      + P + ++   F DA+  Y ++ S  +
Sbjct: 53  NVRTEKQIVNEGSKGLPLRDTLGVKMLSASEESLSPAVSSDDT-FYDALERYDSRRSMSL 111

Query: 117 DSRLSDEDNATEDSIEWLNEVY 138
            SR     +A ED  +  +EVY
Sbjct: 112 SSRDPSPTSANEDEEDEEDEVY 133


>SB_35182| Best HMM Match : CUB (HMM E-Value=0)
          Length = 963

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 58  NKHKNKSVLLMSKKWTNIRDAY-VKSLRMGRNRVKPYIHAEALEFLDAVFVYKTKSSQKV 116
           N    K ++    K   +RD   VK L      + P + ++   F DA+  Y ++ S  +
Sbjct: 609 NVRTEKQIVNEGSKGLPLRDTLGVKMLSASEESLSPAVSSDDT-FYDALERYDSRRSMSL 667

Query: 117 DSRLSDEDNATEDSIEWLNEVY 138
            SR     +A ED  +  +EVY
Sbjct: 668 SSRDPSPTSANEDEEDEEDEVY 689


>SB_15762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 13  ELIGLVRERKCLWDRRCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSVLLMSKKW 72
           +L+  V+ R         + RN YD L  W +   V DP     N K K+K  L   + W
Sbjct: 211 DLLDWVQNRDVYDSLDWVQNRNVYDSLD-WVQNRNVYDPLDWVQNRKEKHKQPLQRFELW 269

Query: 73  T-NIRDAY 79
           T  ++D Y
Sbjct: 270 TPGLQDQY 277


>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 2322

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 65  VLLMSKKWTNIRDAYVKSL-RMGRNRVKPYIHAEALEFLDAVFVYKTKSSQKVDSRLSDE 123
           VLL+ KK   + D +   L R  R+  K     ++        + + KSS  V S L D+
Sbjct: 518 VLLLQKKEKELMDEWKDKLERFERSVKKSDSTLDSHAQKGPEGLPEVKSSPDVTSELQDK 577

Query: 124 DNATEDSIEWLNEVYVDES 142
            N  ED I W N   VDES
Sbjct: 578 ANRNED-ISWRNT--VDES 593


>SB_17198| Best HMM Match : HEAT (HMM E-Value=1.8e-15)
          Length = 802

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/42 (26%), Positives = 24/42 (57%)

Query: 158 QDENSIAHFLMNLVQREENEDRAFFTSITSAVSSLSERSKFE 199
           +D +++ H L NL++R + E R    +  +A + + E ++ E
Sbjct: 393 KDRDNLLHMLFNLIKRPDEEQRQMIMNGCAAFAQVVEPTRVE 434


>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 52  NFHRVNNKHKNKSVLLMSKKWTNIRDAYVKSLRMGRNRVKPYIH----AEALEFLDAVFV 107
           NF R  N+H +    L  +K       Y K  ++GR+ ++  +H     +   F++ +  
Sbjct: 800 NFQRFQNEHNHLKEFLAKQKGNAEHLCYSKPKKIGRDYIEGLLHKSGKKQLYSFVEFIQE 859

Query: 108 YKTKSSQKVDSRLSDEDNATEDSIEWLNEVY 138
            K + S      L D         +  ++VY
Sbjct: 860 CKDRCSASTPYLLKDVPKCVSRVYKMCSDVY 890


>SB_25525| Best HMM Match : ABC1 (HMM E-Value=1.19993e-41)
          Length = 1008

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 9   NEAIELIGLVRERKCLWDRRCTEYRNKYDRLKAW 42
           NE I  I LV + K  W     ++R +Y   KAW
Sbjct: 693 NEGITNISLVGKVKTFWHTTYLDFRIRYLSFKAW 726


>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
          Length = 1177

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 26  DRRCTEYRNKYDRLKAWE-----EICEVLDPNFHRVNNKHKNKSVLLMSKKWTNIRDAYV 80
           +R+ TE  N   +LK  +     E CE L    HR+ N+  NK      K+    ++   
Sbjct: 383 NRQLTEELNNERKLKVKDAKEHFEKCEFLTKEMHRLKNEWSNKE--KEYKRMATEQEKES 440

Query: 81  KSLRMGRNRVK 91
           KSLR   N+++
Sbjct: 441 KSLRKKNNQLE 451


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.130    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,770,978
Number of Sequences: 59808
Number of extensions: 246985
Number of successful extensions: 769
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 11
length of query: 232
length of database: 16,821,457
effective HSP length: 80
effective length of query: 152
effective length of database: 12,036,817
effective search space: 1829596184
effective search space used: 1829596184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)