GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001315-TA|BGIBMGA001315-PA|IPR006578|MADF,
IPR004210|BESS motif
         (232 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M86737-1|AAA58660.1|  709|Homo sapiens high mobility group box p...    32   1.9  
BC005116-1|AAH05116.1|  709|Homo sapiens structure specific reco...    32   1.9  
AK131400-1|BAD18547.1|  852|Homo sapiens protein ( Homo sapiens ...    31   4.5  
AJ313524-1|CAC86408.1|  852|Homo sapiens putative binding protei...    31   4.5  

>M86737-1|AAA58660.1|  709|Homo sapiens high mobility group box
           protein.
          Length = 709

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 16  GLVRERKCLWDRRCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSVLLMSKKWTNI 75
           G+ +E+K  WDR+  + R  Y+  KA +E       +  R  +K K K  + M KK T  
Sbjct: 587 GMSKEKKEEWDRKAEDARRDYE--KAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPS 644

Query: 76  RDAYVKS 82
           R +  KS
Sbjct: 645 RGSSSKS 651


>BC005116-1|AAH05116.1|  709|Homo sapiens structure specific
           recognition protein 1 protein.
          Length = 709

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 16  GLVRERKCLWDRRCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSVLLMSKKWTNI 75
           G+ +E+K  WDR+  + R  Y+  KA +E       +  R  +K K K  + M KK T  
Sbjct: 587 GMSKEKKEEWDRKAEDARRDYE--KAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPS 644

Query: 76  RDAYVKS 82
           R +  KS
Sbjct: 645 RGSSSKS 651


>AK131400-1|BAD18547.1|  852|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16493 fis, clone CTONG3004550, weakly  similar
           to Homo sapiens SH3-domain binding protein 4 (SH3BP4).
           ).
          Length = 852

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 28  RCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSVLLMSKKW-TNIRDAY 79
           R T  RN   R K+  E+ ++LD   H   + H +  +LL   +W  N R+AY
Sbjct: 127 RQTSSRNS-GRSKSVSELLDILDDTAHAHQSIHNSDQILLHDLEWPKNDREAY 178


>AJ313524-1|CAC86408.1|  852|Homo sapiens putative binding protein
           7a5 protein.
          Length = 852

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 28  RCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSVLLMSKKW-TNIRDAY 79
           R T  RN   R K+  E+ ++LD   H   + H +  +LL   +W  N R+AY
Sbjct: 127 RQTSSRNS-GRSKSVSELLDILDDTAHAHQSIHNSDQILLHDLEWLKNDREAY 178


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.317    0.130    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,508,872
Number of Sequences: 224733
Number of extensions: 914178
Number of successful extensions: 1949
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1949
Number of HSP's gapped (non-prelim): 4
length of query: 232
length of database: 73,234,838
effective HSP length: 88
effective length of query: 144
effective length of database: 53,458,334
effective search space: 7698000096
effective search space used: 7698000096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)