Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001315-TA|BGIBMGA001315-PA|IPR006578|MADF,
IPR004210|BESS motif
(232 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36200.1 68415.m04444 kinesin motor protein-related 32 0.38
At3g45560.1 68416.m04921 zinc finger (C3HC4-type RING finger) fa... 31 0.50
At1g48400.1 68414.m05406 F-box family protein contains F-box dom... 31 0.66
At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family pr... 31 0.66
At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-g... 30 1.2
At1g29430.1 68414.m03601 auxin-responsive family protein similar... 28 4.7
At4g35310.1 68417.m05019 calcium-dependent protein kinase, putat... 28 6.2
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 28 6.2
At3g23000.1 68416.m02900 CBL-interacting protein kinase 7 (CIPK7... 27 8.1
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 27 8.1
At2g17290.1 68415.m01997 calcium-dependent protein kinase isofor... 27 8.1
>At2g36200.1 68415.m04444 kinesin motor protein-related
Length = 1056
Score = 31.9 bits (69), Expect = 0.38
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 62 NKSVLLMSKKWTNIRDAYVKSLRMGRNRVKPYIHAEALEFLDAVFVYKTKSSQKVDSRLS 121
NK++L M KK RD Y L +N V+ + A A L+ V T S+ +D L+
Sbjct: 582 NKAILEMKKKVKASRDLYSSHLEAVQNVVRLH-KANANACLEEVSALTTSSACSIDEFLA 640
Query: 122 DEDNATEDSIEWL 134
D T + L
Sbjct: 641 SGDETTSSLFDEL 653
>At3g45560.1 68416.m04921 zinc finger (C3HC4-type RING finger)
family protein contains Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518
Length = 503
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/80 (17%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 15 IGLVRERKCLWDRRCTEYRNKYDRLKAWEEICEVLDP-NFHRVNNKHKNKSVLLMSKKWT 73
+ + ER+CLW + ++ IC+ + +H + H + ++ ++ + T
Sbjct: 302 VAFISERRCLWSMALLQGFSERGTTGFAVAICDQENKLLYHTKGSLHHDSTITILEAELT 361
Query: 74 NIRDAYVKSLRMGRNRVKPY 93
+++ +++R+G +K Y
Sbjct: 362 SLKQGLTEAVRLGITYIKIY 381
>At1g48400.1 68414.m05406 F-box family protein contains F-box domain
Pfam:PF00646
Length = 513
Score = 31.1 bits (67), Expect = 0.66
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 14 LIGLVRERKCLWDRRCTEYRNKYDRLKAWEEICEVLDPNFHRVNNKHKNKSVLLMSKKWT 73
L+GLV + C +D Y N+ + C+ +D F ++N H K L K+
Sbjct: 45 LLGLV-DNLC-FDESMVVYPNEEEETSGSLRFCDFVDKTFALLSNSHIKKFSLSRVYKYN 102
Query: 74 NIRDAYVKS-LR--MGRNRVKPYIHAEALEFL 102
+ D V+ +R M R ++ ++HA + F+
Sbjct: 103 DDVDGMVRRWIRTVMERGLLEIHLHATPMSFV 134
>At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 590
Score = 31.1 bits (67), Expect = 0.66
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 118 SRLSDEDNATEDSIEWLNEVYVDESAVXXXXXXXXXXXXXQDENSIAHFLMNLVQREENE 177
SR S+ ++ E EW + V DES + E ++ H +RE+
Sbjct: 388 SRASENNSDGEGGGEWADAVGADESGNNRPRKRGRRPANGRAE-ALNHVEAERQRREKLN 446
Query: 178 DRAFFTSITSAVSSLSERSKFEFRVQVLKLLNSLRMKDSSMGVKRER 224
R F ++ S V ++S+ K + +N L K M +RER
Sbjct: 447 QR--FYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAERER 491
>At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-glucan
synthase, putative similar to callose synthase 1
catalytic subunit GI:13649388 from [Arabidopsis thaliana]
Length = 1768
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 54 HRVNNKHKNKSVLLMSKKWTNIRDAYVKSLRMGRNRVKPY 93
H+ H+ + +L + K +R AYV + +GR V+ Y
Sbjct: 1076 HKARGDHRAEEILFLMKNHDALRIAYVDEVDLGRGEVEYY 1115
>At1g29430.1 68414.m03601 auxin-responsive family protein similar to
auxin-induced protein 10a 6B {SP:P33083) [Glycine max]
Length = 141
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 160 ENSIAHFLMNLVQREENED--RAFFTSITSAVSSLSERSKFEFRVQVL 205
+++ +L+NL+QR +ED +A SI+SA SS + Q+L
Sbjct: 92 DSAFLEYLINLIQRRMDEDTEKALLLSISSARSSFQPQQHCSATQQLL 139
>At4g35310.1 68417.m05019 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calmodulin-domain protein
kinase CDPK isoform 6 [Arabidopsis thaliana]
gi|1399275|gb|AAB03246; contains protein kinase domain,
Pfam:PF00069; contains EF hand domain (calcium-binding
EF-hand), Pfam:PF00036, INTERPRO:IPR002048
Length = 556
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 62 NKSVLLMSKKWTNIRDAYVKSLRMGRNRV-KPYIHAEALEFLDAVFVYKTKSSQKVDSRL 120
N++ ++ K NIRD Y S ++G+ + Y+ E +D + K+ S +K+ S+
Sbjct: 80 NQAYYVLGHKTPNIRDIYTLSRKLGQGQFGTTYLCTEIASGVD--YACKSISKRKLISKE 137
Query: 121 SDEDNATEDSI 131
ED E I
Sbjct: 138 DVEDVRREIQI 148
>At1g58050.1 68414.m06579 helicase domain-containing protein contains
similarity to SP|P24785 Dosage compensation regulator
(Male-less protein) (No action potential protein)
{Drosophila melanogaster}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 1417
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 43 EEICEVLDPNFHRVNNKHKNKSVLLMSKKWTNIRDAYVKSLRMGR-NRVKP 92
E++ V+D H+ N + +K + M + W + +A RMGR RVKP
Sbjct: 956 EDVVYVIDSGKHKENRYNPHKKLSSMVEDWVSKANA---RQRMGRAGRVKP 1003
>At3g23000.1 68416.m02900 CBL-interacting protein kinase 7 (CIPK7)
identical to CBL-interacting protein kinase 7
[Arabidopsis thaliana] gi|13249113|gb|AAK16682; contains
Pfam profiles PF00069: Protein kinase domain and
PF03822: NAF domain; identical to cDNA CBL-interacting
protein kinase 7 (CIPK7) GI:13249112
Length = 429
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 70 KKWTNIRDAYVKSLRMGRNRVKPYIHAEALEFLDAVFVYKTKSSQKVDSRLSDEDNATED 129
KK ++ VK + +GR R + A L V K ++ DSR SD ED
Sbjct: 360 KKKMMKKEGEVKVVGLGRGRTVIVVEAVELTVDVVVVEVKVVEGEEDDSRWSDLITELED 419
Query: 130 SI-EWLNEV 137
+ W N++
Sbjct: 420 IVLSWHNDI 428
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 165 HFLMNLVQREENEDRAFFTSITSAV 189
HFL+N++ ++EN A +IT+AV
Sbjct: 328 HFLVNVLMKQENAVTALAVNITAAV 352
>At2g17290.1 68415.m01997 calcium-dependent protein kinase isoform 6
(CPK6) identical to calmodulin-domain protein kinase
CDPK isoform 6 [Arabidopsis thaliana]
gi|1399275|gb|AAB03246; contains protein kinase domain,
Pfam:PF00069; contains EF hand domain (calcium-binding
EF-hand), Pfam:PF00036, INTERPRO:IPR002048
Length = 544
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 62 NKSVLLMSKKWTNIRDAYVKSLRMGRNRV-KPYIHAEALEFLDAVFVYKTKSSQKVDSRL 120
N+S ++ K NIRD Y S ++G+ + Y+ + +D + K+ S +K+ S+
Sbjct: 68 NQSYYVLGHKTPNIRDLYTLSRKLGQGQFGTTYLCTDIATGVD--YACKSISKRKLISKE 125
Query: 121 SDEDNATEDSI 131
ED E I
Sbjct: 126 DVEDVRREIQI 136
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.130 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,907,519
Number of Sequences: 28952
Number of extensions: 180739
Number of successful extensions: 517
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 12
length of query: 232
length of database: 12,070,560
effective HSP length: 79
effective length of query: 153
effective length of database: 9,783,352
effective search space: 1496852856
effective search space used: 1496852856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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